View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_30 (Length: 250)
Name: NF10739_low_30
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 50 - 242
Target Start/End: Complemental strand, 32260953 - 32260761
Alignment:
| Q |
50 |
acgatggatccaatatgtgatatataagattaattaagtatttaaactattgcgtaccttgatttggtgcaatttaataaaggttataaggtgaggtatg |
149 |
Q |
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| T |
32260953 |
acgatggattcaatatgtgatatataagattaattaagtatttaaactattgcgtaccttgatttggtgcaatttaataaaggttataaggtgaggtatg |
32260854 |
T |
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| Q |
150 |
cccttgatgttcaacatgaggccaagcactgtgccatgtttgggcttgatgttatatatcatagaaaccaacacacaagcaaccacctttgct |
242 |
Q |
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| T |
32260853 |
cccttgatgttcaacatgaggccaagcactgtgccatgtttgggcttgatgttatatatcatagaaaccaacacacaagcaaccacctttgct |
32260761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32261045 - 32260998
Alignment:
| Q |
1 |
aaaaaagaatactaatatacaaacaattaacatactaacatttattcc |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261045 |
aaaaaagaatactaatatacaaacaattaacatactaacatttattcc |
32260998 |
T |
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