View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_31 (Length: 250)
Name: NF10739_low_31
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36525115 - 36524882
Alignment:
| Q |
1 |
tttgtggcatttggaacttgattttctgcaaatacattcgcatttgagtgatgggatgaagtcttaggtactgcatcactcacatgagctttaactatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36525115 |
tttgtggcatttggaacttgattttctgcaaatacattcgcatttgagtgatgggatgaagtcttaggtactgcatcactcacatgagctttaactatca |
36525016 |
T |
|
| Q |
101 |
tgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcagg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
36525015 |
tgtcctataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagtaaatttatttttatcaag |
36524916 |
T |
|
| Q |
201 |
atgaagtagcaatgcgagttttctgtactgtttc |
234 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
36524915 |
atgaagtagcaatccgagttttctgtactgtttc |
36524882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36531447 - 36531217
Alignment:
| Q |
1 |
tttgtggcatttggaacttgattttctgcaaatacattcgcatttgagtgatgggatgaagtcttaggtactgcatcactcacatgagctttaactatca |
100 |
Q |
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| T |
36531447 |
tttgttgcattaggaacttgatttgctgcaggt---ttcccattagagggatgggatgaggtcttagatgctgcagctctaacatgggctttaaccttta |
36531351 |
T |
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| Q |
101 |
tgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcagg |
200 |
Q |
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| T |
36531350 |
tgtcgtataaagaccgcgttgctttatcactcaacaccctattggcttccccaatcaacttgaaagcagcttctgcaccagcagatttatttttatcagg |
36531251 |
T |
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| Q |
201 |
atgaagtagcaatgcgagttttctgtactgtttc |
234 |
Q |
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||||||||||| ||| || || ||||||||||| |
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| T |
36531250 |
atgaagtagcagtgcaagcttcttgtactgtttc |
36531217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 26305989 - 26306118
Alignment:
| Q |
101 |
tgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcagg |
200 |
Q |
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|||| |||||||||| | |||||||||| |||| || ||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||| |
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| T |
26305989 |
tgtcatataaagatcgttgtgcttggtcactcaaaaccctattggcttctccaatcaacttgaaagcagcttcagcaccagaaaatttatttttatcagg |
26306088 |
T |
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| Q |
201 |
atgaagtagcaatgcgagttttctgtactg |
230 |
Q |
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| T |
26306089 |
atgaagtagcagtgcgagctttctgtactg |
26306118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 47090535 - 47090640
Alignment:
| Q |
106 |
tataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaa |
205 |
Q |
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|||||||| | ||||| ||||||| |||| || || || || ||| | ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| |
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| T |
47090535 |
tataaagaacgctttgtttggtcactcaatactctgttagcatccacgatcaacttgaaagcagcctctgccccagcagatttatttttatcaggatgaa |
47090634 |
T |
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| Q |
206 |
gtagca |
211 |
Q |
| |
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|||||| |
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| T |
47090635 |
gtagca |
47090640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 6791535 - 6791477
Alignment:
| Q |
145 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatg |
203 |
Q |
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||||||||||||| ||| || |||||||||||||||||||| || ||||| |||||||| |
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| T |
6791535 |
gcttccccaatcagcttaaatgcagcttctgcaccagcaaacttgtttttgtcaggatg |
6791477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 49156796 - 49156858
Alignment:
| Q |
145 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagt |
207 |
Q |
| |
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||||| ||||||| ||| || |||||||| ||||| ||||| || |||||||||||||||||| |
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| T |
49156796 |
gcttctccaatcagcttaaatgcagcttcagcaccggcaaacttgtttttatcaggatgaagt |
49156858 |
T |
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