View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_35 (Length: 249)
Name: NF10739_low_35
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 39854340 - 39854548
Alignment:
| Q |
27 |
atcaaactgaaatgatttcctctgttgtaggccatcatcatatgctaaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacata |
126 |
Q |
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| T |
39854340 |
atcaaactgaaatgatttcctctgttgtaggccatcatcatatactaaatcaatttcattgcagtgtaattctgaaacttttcgttgagatgacaacata |
39854439 |
T |
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| Q |
127 |
tgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcga |
226 |
Q |
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| T |
39854440 |
tgaattgtttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccacca-ttttttcaaccacatttttaagtcctaatcttgctcga |
39854538 |
T |
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| Q |
227 |
caattcgttc |
236 |
Q |
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|||||||||| |
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| T |
39854539 |
caattcgttc |
39854548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 21955622 - 21955507
Alignment:
| Q |
72 |
taaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccaca |
171 |
Q |
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|||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||| | ||| | |||||||||||||||||||| || || || |
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| T |
21955622 |
taaatcaatttcattgcaatgaaattttgatactttttgttgagatgacaacatatgaagtgtttgtgatagatgtaaatcatggttatgttcctctgca |
21955523 |
T |
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| Q |
172 |
aattcatgaaccacca |
187 |
Q |
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| T |
21955522 |
aattcatgcaccacca |
21955507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 11188717 - 11188625
Alignment:
| Q |
48 |
ctgttgtaggccatcatcatatgctaaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttg |
140 |
Q |
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|||||| |||||| |||||| || || |||||||| || || || ||||||||||||||| |||||||||||| ||||| || ||||||| |
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| T |
11188717 |
ctgttgcaggccagcatcatctggtagatcaatttgatggcgttgaaattctgaaacttttctttgagatgacaatgtatgagttgtttcttg |
11188625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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