View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_37 (Length: 240)
Name: NF10739_low_37
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 23267637 - 23267832
Alignment:
| Q |
13 |
ttgaccaaccttggaattagaatttcgtttatccctttatttaggaggccaacaaggagcaattaccaagcagaggatatgtgatcctagcatcccgtca |
112 |
Q |
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| T |
23267637 |
ttgaccaaccctacaattagaagttcgtttatccctttatttaggaggccaacaaagagcaattaccaagcagaggatatgtgatcctagcatcccgcca |
23267736 |
T |
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| Q |
113 |
aggagattatcatggcaaatagaaagagatgtgaagaagatctccaaagaaaactgttaattgcttgatgaaggaaaatgaatgaaaaatggaatta |
209 |
Q |
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| T |
23267737 |
aggagattatcatgg-taacagaaagagatgtgggaaagctctccaaagaaaactgttcattgcttgatgaaggaaaataaatgaaaaatggaatta |
23267832 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 14654547 - 14654579
Alignment:
| Q |
60 |
gccaacaaggagcaattaccaagcagaggatat |
92 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
14654547 |
gccaacaaagagcaattaccaagcagaggatat |
14654579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 14664338 - 14664370
Alignment:
| Q |
60 |
gccaacaaggagcaattaccaagcagaggatat |
92 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
14664338 |
gccaacaaagagcaattaccaagcagaggatat |
14664370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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