View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_38 (Length: 239)
Name: NF10739_low_38
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4098442 - 4098664
Alignment:
| Q |
1 |
ctagttgattgttatacactaatcttaagagatacattgtgatctttgatttaagaatatattcatgcagatttttggagtaattaatagtaccgtacga |
100 |
Q |
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| T |
4098442 |
ctagttgattgttatacactaatcttaagagatacattgtgatctttgatttaagaatatattcatgcagatttttggagtaattaatagtaccgtacga |
4098541 |
T |
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| Q |
101 |
acgtcgttgcaagctggataatacaattttgtttctattttgaccactgtactatttttgtagctaacatcatgaagaggaaggaaaaaacaatattcac |
200 |
Q |
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| T |
4098542 |
acgtcgttgcaagctggataatacaattttgtttctattttgaccactgtactatttttgtagctaacatcatgaagaggaaggaaaaaacaatattcac |
4098641 |
T |
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| Q |
201 |
caattaatgaccattgaagcacc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4098642 |
caattaatgaccattgaagcacc |
4098664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 945458 - 945538
Alignment:
| Q |
3 |
agttgattgttatacactaatcttaagagatacattgtgatctttgatttaagaatatattcatgcagatttttggagtaat |
84 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |
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| T |
945458 |
agttgattattatacactaaacttaagagatacattgtgatgtt-gatttaagaatatattcatgcagatgtttggagtaat |
945538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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