View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10739_low_4 (Length: 423)
Name: NF10739_low_4
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 10980173 - 10980507
Alignment:
| Q |
15 |
acatatggttcttgaacttcaaagatgcatgatgggttgttatacatgacatgaaccattgagcaaagataagaaaaggaaaaaacaaagaatgacccac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10980173 |
acatatggttcttgaacttcaaagatgcatgatgggttgttatacatgacatgaaccattgagcaaagataagaaaaggaaaaaacaaa-aatgacccac |
10980271 |
T |
|
| Q |
115 |
cactagaaagttcacataagaaacaatatttatggtggtacaggtaaaattactatttcaacactgaacaataagtagacgtgaaggatgagaatggagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10980272 |
cactagaaagttcacataagaaacaatatttatggtggtacaggtaaaattactgtttcaacactgaacaataagtagacgtgaaggatgagaatggagg |
10980371 |
T |
|
| Q |
215 |
tagttggaaaaacagcgccagtgaacattaattaataacagtaccacagataacaacagcagagtgaactcaatctatgtcaaatataaataaaaaatat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10980372 |
tagttggaaaaacagcgccagtgaacattaattaataacagtaccacagatagcaacagcag---gaactcaatctatgtcaaatataaataaaaaatat |
10980468 |
T |
|
| Q |
315 |
atctatattattttatggtctgtgtgtaaataaatgtaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10980469 |
atctatattattttatggtctgtgtgtaaataaatgtaa |
10980507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University