View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_41 (Length: 236)
Name: NF10739_low_41
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_41 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 46289766 - 46289542
Alignment:
| Q |
12 |
cacactcaacattatgtatgtttgggcctcacttcaatgccttcaagaacaagtcctcccttcaactgatgaccaatttccatgagactcattttaatct |
111 |
Q |
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| T |
46289766 |
cacactcaacattatgtatgtttgggcctcacttcaatgccttcaagaacaagtcctcccttcaactgatgaccaatttccatgagactcattttaatct |
46289667 |
T |
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| Q |
112 |
cctcgtcaccttcaccactgaaaaattccccaatctcaatctccatccacccatcttctctcttagatggtacttgaatattacctccatcttcttgttc |
211 |
Q |
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| T |
46289666 |
cctcgtcaccttcaccactgaaaaattccccaatctcaatctccatccacccatcttctctcttagatggtacttgaatattacctccatcttcttgttc |
46289567 |
T |
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| Q |
212 |
ttgaatcactctgtttcttctgttc |
236 |
Q |
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| T |
46289566 |
ttgaatcactctgtttcttctgttc |
46289542 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 37186278 - 37186370
Alignment:
| Q |
98 |
actcattttaatctcctcgtcaccttcaccactgaaaaattc-cccaatctcaatctccatccacccatcttctctcttagatggtacttgaat |
190 |
Q |
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|||||| |||| |||| |||| ||||||||| ||||||||| |||||| ||||| |||||||||||||| || || |||||||| ||| |||| |
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| T |
37186278 |
actcatcttaacctccatgtcaacttcaccacagaaaaattcacccaat-tcaatttccatccacccatcatcccttttagatggaactcgaat |
37186370 |
T |
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