View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_43 (Length: 229)
Name: NF10739_low_43
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 36525194 - 36525409
Alignment:
| Q |
1 |
ccaacactgtaaaggcaggttccagtaccccttaagtattatgaatatggtcataccctgtcacaatttcaagaaaagctttaaagctcaagctattagt |
100 |
Q |
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| T |
36525194 |
ccaacactgtaaaggcaggttccagtaccccttaagtattatgaatatggtcataccctgtcacaattgtaagaaaaactttaaagctcaagctattggt |
36525293 |
T |
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| Q |
101 |
attagtgatcaacagcctgccccttcatctgtaccgtttggtgccccaaaaaaggctcgaatgcaggctccgccaaaaccagcctctaaaagtaatcgtg |
200 |
Q |
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| T |
36525294 |
attagtgatcaacagcctgccccttcatctgtaccctttggtgccccgaaaaaggctcgaatgcaggctccgccaaaactagcctctaaaagtaatcgtg |
36525393 |
T |
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| Q |
201 |
gaaagagtaagaaggg |
216 |
Q |
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|||||||||||||||| |
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| T |
36525394 |
gaaagagtaagaaggg |
36525409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 36531650 - 36531722
Alignment:
| Q |
131 |
gtaccgtttggtgccccaaaaaaggctcgaatgcaggctccgccaaaaccagcctctaaaagtaatcgtggaa |
203 |
Q |
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|||| |||||||||||| ||||||| || || ||||| ||| ||||||||||||| |||||||||| |||||| |
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| T |
36531650 |
gtacagtttggtgccccgaaaaaggttccaacgcaggatccaccaaaaccagcctgtaaaagtaatggtggaa |
36531722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 26305775 - 26305688
Alignment:
| Q |
117 |
ctgccccttcatctgtaccgtttggtgccccaaaaaaggctcgaatgcaggctccgccaaaaccagcctctaaaagtaatcgtggaaa |
204 |
Q |
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||||||| |||| ||||| |||| |||||| ||||| |||| ||||||||||| |||||| | ||||| ||||||||| ||||||| |
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| T |
26305775 |
ctgccccatcatttgtacggtttcgtgcccggaaaaatgctcccatgcaggctccaccaaaagcggcctccaaaagtaatggtggaaa |
26305688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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