View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10739_low_47 (Length: 226)

Name: NF10739_low_47
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10739_low_47
NF10739_low_47
[»] chr1 (10 HSPs)
chr1 (136-226)||(9072512-9072602)
chr1 (1-106)||(9072596-9072701)
chr1 (147-226)||(9065201-9065280)
chr1 (128-222)||(8864355-8864449)
chr1 (128-222)||(8971918-8972012)
chr1 (128-222)||(9006946-9007040)
chr1 (168-226)||(8868599-8868657)
chr1 (13-103)||(9100138-9100228)
chr1 (128-226)||(9136734-9136832)
chr1 (3-105)||(8864436-8864538)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 9072602 - 9072512
Alignment:
Q  136 caaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaata 226  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  9072602 caaacccttcaaagaagtgggagtaataaatttcacatgacaaccaacttgtaaatcttcagcagttatatgaccagctatagcataaata 9072512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9072701 - 9072596
Alignment:
Q  1 ttcacaatgatactgacagggaagattcaaccatgaaatttcaaatccataaactaacgacttgtgtatttcatcatatgatattacttgatttccttgc 100  Q
    |||||||| || |||||| ||||||  |||||||||||| ||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  9072701 ttcacaataattctgacaaggaagacgcaaccatgaaatctcaaatccatacactaatgccttttgtatttcatcatatgatattacttgatttccttgc 9072602  T
Q  101 aaaccc 106  Q
    ||||||    
T  9072601 aaaccc 9072596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 9065201 - 9065280
Alignment:
Q  147 aagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaata 226  Q
    ||||||||||| |||| |||||||||||||||||| |||| || || ||||| ||||||| |||| ||||||||||||||    
T  9065201 aagaagtgggagtaaccaatttcacatgacaaccaacttgaaagtcctcagccgttaaatcaccaactatagcataaata 9065280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 8864449 - 8864355
Alignment:
Q  128 tttcttttcaaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcata 222  Q
    ||||||| ||||||   ||||||||| ||| |||| |||||||||||||||||| |||| ||||||| |||| |||||| |||||| ||||||||    
T  8864449 tttctttgcaaacctgaccaagaagttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcata 8864355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 8971918 - 8972012
Alignment:
Q  128 tttcttttcaaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcata 222  Q
    ||||||| |||||||  | |||| || ||| |||| |||||||||||||||||| |||| ||||||| |||| |||||| |||||| ||||||||    
T  8971918 tttctttccaaacccaacaaagatgttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcata 8972012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 9006946 - 9007040
Alignment:
Q  128 tttcttttcaaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcata 222  Q
    ||||||| |||||||  | |||| || ||| |||| |||||||||||||||||| |||| ||||||| |||| |||||| |||||| ||||||||    
T  9006946 tttctttccaaacccaacaaagatgttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcata 9007040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 8868657 - 8868599
Alignment:
Q  168 tcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaata 226  Q
    |||||||||||||| |||| ||||| |||||| |||||| |||||| ||||||||||||    
T  8868657 tcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaata 8868599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 9100228 - 9100138
Alignment:
Q  13 ctgacagggaagattcaaccatgaaatttcaaatccataaactaacgacttgtgtatttcatcatatgatattacttgatttccttgcaaa 103  Q
    |||||| ||||| |||| ||||||||| ||||||||||| ||||||| ||| || ||   ||||||||| | ||||||||||| |||||||    
T  9100228 ctgacatggaagtttcatccatgaaatctcaaatccatatactaacgccttatgaatgatatcatatgaaagtacttgatttctttgcaaa 9100138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 9136832 - 9136734
Alignment:
Q  128 tttcttttcaaacccttccaagaagtgggactaacaaatttcacatgacaaccagcttgtaaatcttcagcagttaaataaccagctatagcataaata 226  Q
    ||||||| |||||||  |||||||||  || ||||  ||||||||||||| ||| |||| ||||||| ||||  ||||| |||||| ||||||||||||    
T  9136832 tttctttgcaaacccgaccaagaagttagagtaactgatttcacatgacagccaacttgaaaatcttgagcaactaaatcaccagccatagcataaata 9136734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 8864538 - 8864436
Alignment:
Q  3 cacaatgatactgacagggaagattcaaccatgaaatttcaaatccataaactaacgacttgtgtatttcatcatatgatattacttgatttccttgcaa 102  Q
    ||||| ||| || ||| |||||||| ||||||||||| ||||||||||| || || |  ||||| ||  ||||||| || | ||||||||||| ||||||    
T  8864538 cacaaagattcttacaaggaagattgaaccatgaaatatcaaatccatataccaatgctttgtgcatgacatcataggaaagtacttgatttctttgcaa 8864439  T
Q  103 acc 105  Q
    |||    
T  8864438 acc 8864436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University