View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_5 (Length: 420)
Name: NF10739_low_5
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 2488750 - 2488369
Alignment:
| Q |
18 |
ttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagca |
117 |
Q |
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| T |
2488750 |
ttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagca |
2488651 |
T |
|
| Q |
118 |
tctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488650 |
tctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagttt |
2488551 |
T |
|
| Q |
218 |
atatatcctttgtgatctacacaacaacttatcagcatcccgcagatatagaacaatgggataggtctttgacacataaagtagaacctgcaagtgaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488550 |
atatatcctttgtgatctacacaacaacttatcagcatcccgcatatatagaacaatgggataggtctttgacacataaagtagaacctgcaagtgaatt |
2488451 |
T |
|
| Q |
318 |
ttccaatcatcaaatcaatgtcttttgttgagatgtatagccttactatccaaaacacgtttatgtgctgatgctgaaatct |
399 |
Q |
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| T |
2488450 |
ttccaatcatcaaatcaatgtcttttgttgagatgtatagccttactatccaaaacacatttatgtgctgatgctgaaatct |
2488369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 41592424 - 41592747
Alignment:
| Q |
19 |
tcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagcat |
118 |
Q |
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||||||||||| |||| ||||| |||||||||||||| ||| | ||||||||||| || ||| |||||||||| | ||| |||||||| ||||| | |
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| T |
41592424 |
tcttcatatcctcttccaattgtgacttccagctgacgagatgtgattcatcttccggaggtctgatttctatatcgtacgggaagagcacagtaagttt |
41592523 |
T |
|
| Q |
119 |
ctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagttta |
218 |
Q |
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|||||| | | || |||||||||||||||| | || |||||||||| ||||| ||| |||||||| ||| || | |||||| | ||||| | ||| |
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| T |
41592524 |
ctcatccaattcttcaaattcattaccagaatctagaactcgcgaaccaagaatcagaatcggtccagagagtctcttcaacattttttggaacatgtta |
41592623 |
T |
|
| Q |
219 |
tatatcctttgtgatctacacaacaacttatcagcatcccgcagatatagaacaatgggataggtctttgacacataaagtagaacctgcaagtgaattt |
318 |
Q |
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|||||| ||||||||||| | || ||| ||||| |||||| ||||||||| ||||||||||| || ||||||||| |||||||||||||||||| || |
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| T |
41592624 |
tatatcttttgtgatctagataataacctatcaacatccctcagatatagcacaatgggataagtttttgacacagaaagtagaacctgcaagtaaaacg |
41592723 |
T |
|
| Q |
319 |
tccaatcatcaaatcaatgtcttt |
342 |
Q |
| |
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|||||| | |||||| |||||||| |
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| T |
41592724 |
tccaattaccaaatccatgtcttt |
41592747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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