View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_52 (Length: 207)
Name: NF10739_low_52
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 32650986 - 32650811
Alignment:
| Q |
18 |
tactgccattcattcttctccaatttctatcaccttcttccactttgatttcctctccacaactccaaccccatatccacataatcgaagaaggagacag |
117 |
Q |
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| T |
32650986 |
tactgccattcattcttctccaatttctatcaccttcttccactttgatttcctctccacaactccaaccccatatccacacaattgaagaaggagacag |
32650887 |
T |
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| Q |
118 |
aagatatttatagtggttagcnnnnnnnaatcaactctttatttctcaaaacaaaaatctttcattcgttcatctc |
193 |
Q |
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| T |
32650886 |
aagatatttacagtggttagctttttttaatcaactctttatttctcaaaccaaaaatctttcattcgttcatctc |
32650811 |
T |
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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 33854099 - 33854148
Alignment:
| Q |
18 |
tactgccattcattcttctccaatttctatcaccttcttccactttgatt |
67 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33854099 |
tactgccattcattcttctccaatttctatcaccttcgtccactttgatt |
33854148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 33854179 - 33854239
Alignment:
| Q |
67 |
ttcctctccacaactccaaccccatatccacataatcgaagaaggagacagaagatattta |
127 |
Q |
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|||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
33854179 |
ttcctctccataactccaaacccatatccacacaatcgaagaaggagacaaaagatattta |
33854239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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