View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_8 (Length: 354)
Name: NF10739_low_8
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 30619511 - 30619843
Alignment:
| Q |
1 |
caacgctccagatttcttctcacataatcagtctcagaatgtgtgccaatacacactttgactccttgtatatattagtgacttagatgaacattagcag |
100 |
Q |
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| T |
30619511 |
caacgctccagatttcttctcacataatcagtctcagaatgtgtgccaatacacactttgactccttgtatatattagtgacttagatgaacattagcag |
30619610 |
T |
|
| Q |
101 |
atatgattcagttgaactggcacaatatatcattaaacaaataagaaacaaactaattgttaaaaggttacaactctaagcaatgaaacagacctgatgc |
200 |
Q |
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| T |
30619611 |
atatgattcagttgaactggcacaatatatcattaaacaaataagaaacaaactaattgttaaaaggttacaactctaagcaatgaaacagacctgatgc |
30619710 |
T |
|
| Q |
201 |
aggaagggacagctacgaagtacatctccaacattaacttgctccaagcatacactgcaagtgagctcatcaccagaggcttttgagtttccaaccgcat |
300 |
Q |
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| T |
30619711 |
aggaagggcaagctacgaagtacatctccaacattaacttgctccaagcatacactgcaagtgagctcatcaccagaggcttttgagtttccaaccgcat |
30619810 |
T |
|
| Q |
301 |
ttgaattatcctgtttcttctgccagaaacgaa |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
30619811 |
ttgaattatcctgtttcttctgccagaaacgaa |
30619843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 30627689 - 30628055
Alignment:
| Q |
1 |
caacgctccagatttcttctcacataatcagtctcagaatgtgtgccaatacacac-------------tttgactccttgtatatattagtgacttaga |
87 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||| ||||| ||||| |
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| T |
30627689 |
caaccctccagatttcttctcacataatcagtatcagaatgtgtgccaatacacacaaagaatacatgctttaacttcttgtatatataagtgatttaga |
30627788 |
T |
|
| Q |
88 |
tgaacattagcagatatgattcagttgaactggcacaatatatcattaaacaaataagaaacaaactaattgttaaaaggttacaactctaagcaatgaa |
187 |
Q |
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|||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
30627789 |
tgaacattagcagagatgattcagttgaactagcacagtatatcattaaacaaataagaaacaaactatttgttaaaaagttacaactctaagcaatgaa |
30627888 |
T |
|
| Q |
188 |
acagacctgatgcaggaagggacagctacgaagtacatctccaacattaacttgctccaagcatacactgcaagtgagctcatcaccagaggcttttgag |
287 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
30627889 |
acagacctgatgcaggcagggcaagctacgaagtacatctccaacattaacttgctccaagcatacactgcaagtgagctcatcatcagaggcctttgag |
30627988 |
T |
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| Q |
288 |
tttccaaccgcatttgaattatcctgtttcttctgccagaaacgaaaagaaacgaatcatgaaaacc |
354 |
Q |
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| T |
30627989 |
tttccaaccgcatttaaattatcctgtgtcttctgccacaaacgaaaagaaatgaatcatgaaaacc |
30628055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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