View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10739_low_9 (Length: 347)
Name: NF10739_low_9
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 23254143 - 23253910
Alignment:
| Q |
41 |
ataagttaacatgaacctttaattaattgta-gtaacttattcataatttttcaaaaatatcctataaattatcgtaaaatattttgtttaaatcatgat |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23254143 |
ataagttaacgtgaacctttaattaattgtaagtaacttattcataatttttcaaaaatatggtataatttatcgtaaaatattttgtttaaatcatgat |
23254044 |
T |
|
| Q |
140 |
agagaaaacatgttgttgacggcattgtaagaaaatggcgccactgaactctctttcgaaagagtatccactcatcgactctaacttccaaactttctgc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23254043 |
agagaaaacatgttgttgacggcattgtaagaaaatggcaccactgaactctctttcgaaagagtatccactcatcgactctaacttccaaactttctgc |
23253944 |
T |
|
| Q |
240 |
gcttcccacgccatttattctggtcgttcctctc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23253943 |
gcttcccacgccatttattctggtcgttcctctc |
23253910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 23254199 - 23254168
Alignment:
| Q |
5 |
atccttcttactatcttttcactttctttctt |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23254199 |
atccttcttactatcttttcactttctttctt |
23254168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43316485 - 43316447
Alignment:
| Q |
1 |
tttcatccttcttactatcttttcactttctttcttttg |
39 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
43316485 |
tttcatcctccttgctatcttttcactttctttcttttg |
43316447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University