View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10740_high_18 (Length: 250)
Name: NF10740_high_18
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36347517 - 36347276
Alignment:
| Q |
1 |
attcgtaacaatttccatagactaattaacttaattgttgaaatcatggtgagccgtcgtgagtttgtaatttagtctttcggtgattaaatgcagggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36347517 |
attcgtaacaatttccatagactaattaacttaattgttgaaatcatggtgagccgtcgtgagtttgtaatttagtttttcggtgattaaatgcagggag |
36347418 |
T |
|
| Q |
101 |
gttcaggaagtgctagcaacatcacatttcagaacattgaaatggacaatgtgaccaaccccataataattgaccagaattactgtgacaagnnnnnnnt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36347417 |
gttcaggaattgctagcaacatcacatttcagaacattgaaatggacaatgtgaccaaccccataataattgaccagaattactgtgacaagaaaaaaat |
36347318 |
T |
|
| Q |
201 |
gtcatgtaaacaaatggtaaattatttttcacaacctttgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36347317 |
gtcatgtaaacaaatggtaaattatttttcacaacttttgct |
36347276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 36354429 - 36354264
Alignment:
| Q |
70 |
atttagtctttcggtgattaaatgcagggaggttcaggaagtgctagcaacatcacatttcagaacattgaaatggacaatgtgaccaaccccataataa |
169 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36354429 |
atttggtcttacggtgattaaatacagggaggttcaggaagtgctagcaacatcaaatttcagaacattgaaatggacaatgtgaccaaccccattataa |
36354330 |
T |
|
| Q |
170 |
ttgaccagaattactgtgacaagnnnnnnntgtcatgtaaacaaatggtaaattatttttcacaac |
235 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
36354329 |
ttaaccagaattactgtgacaagaaaaaaaaaccatgtaaaaaaatggtaaattatttttcacaac |
36354264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 21183769 - 21183671
Alignment:
| Q |
90 |
aatgcagggaggttcaggaagtgctagcaacatcacatttcagaacattgaaatggacaatgtgaccaaccccataataattgaccagaattactgtga |
188 |
Q |
| |
|
|||| |||| || ||||||||||| |||||||| | ||||||||||||| ||||||| ||||| || |||||||||||||| || ||||| |||||||| |
|
|
| T |
21183769 |
aatgtagggtgggtcaggaagtgcaagcaacattaaatttcagaacattcaaatggaaaatgtaactaaccccataataatagatcagaactactgtga |
21183671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University