View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10740_high_21 (Length: 250)

Name: NF10740_high_21
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10740_high_21
NF10740_high_21
[»] chr6 (19 HSPs)
chr6 (57-164)||(7635576-7635683)
chr6 (57-165)||(18290436-18290544)
chr6 (57-164)||(7635124-7635231)
chr6 (57-164)||(18290215-18290322)
chr6 (57-164)||(4348847-4348954)
chr6 (64-164)||(12999425-12999525)
chr6 (57-164)||(28983233-28983340)
chr6 (57-164)||(34717696-34717803)
chr6 (57-164)||(28982782-28982888)
chr6 (57-157)||(19062764-19062864)
chr6 (57-164)||(34717242-34717349)
chr6 (61-158)||(28535408-28535506)
chr6 (94-165)||(18605837-18605908)
chr6 (102-164)||(18605002-18605064)
chr6 (96-164)||(2924952-2925020)
chr6 (98-137)||(10608301-10608340)
chr6 (57-91)||(4349238-4349272)
chr6 (98-137)||(1034749-1034788)
chr6 (98-150)||(930937-930991)
[»] chr5 (23 HSPs)
chr5 (57-165)||(8321328-8321436)
chr5 (57-164)||(3595777-3595884)
chr5 (57-164)||(12330603-12330710)
chr5 (61-164)||(7858327-7858430)
chr5 (57-164)||(12330148-12330255)
chr5 (57-163)||(3596234-3596340)
chr5 (57-165)||(8320874-8320982)
chr5 (57-164)||(24027187-24027294)
chr5 (57-164)||(29759597-29759704)
chr5 (57-162)||(24027627-24027732)
chr5 (57-164)||(7858760-7858867)
chr5 (57-164)||(5620810-5620917)
chr5 (57-137)||(16996970-16997050)
chr5 (101-164)||(31078456-31078519)
chr5 (57-158)||(42655681-42655782)
chr5 (102-164)||(42654837-42654898)
chr5 (102-158)||(36912252-36912308)
chr5 (59-150)||(16970976-16971067)
chr5 (102-157)||(17591370-17591424)
chr5 (98-164)||(35262452-35262518)
chr5 (96-158)||(35106879-35106941)
chr5 (119-159)||(461946-461986)
chr5 (118-158)||(25992746-25992786)
[»] chr2 (21 HSPs)
chr2 (57-165)||(30899389-30899497)
chr2 (57-164)||(6609984-6610091)
chr2 (57-164)||(15561541-15561648)
chr2 (57-164)||(15561981-15562088)
chr2 (57-164)||(16903838-16903945)
chr2 (57-165)||(7994054-7994162)
chr2 (57-165)||(7994514-7994622)
chr2 (57-164)||(16992332-16992440)
chr2 (61-167)||(30899846-30899952)
chr2 (57-163)||(6609552-6609658)
chr2 (65-164)||(37996532-37996631)
chr2 (57-152)||(16903410-16903504)
chr2 (57-137)||(3705364-3705444)
chr2 (57-164)||(16681566-16681673)
chr2 (57-164)||(3705765-3705874)
chr2 (165-242)||(44251741-44251818)
chr2 (63-137)||(16682213-16682287)
chr2 (98-158)||(34617659-34617719)
chr2 (187-236)||(44263018-44263067)
chr2 (102-137)||(40992250-40992285)
chr2 (165-201)||(44260117-44260153)
[»] scaffold0508 (2 HSPs)
scaffold0508 (57-164)||(4133-4240)
scaffold0508 (57-165)||(4565-4673)
[»] chr8 (17 HSPs)
chr8 (57-164)||(30846016-30846123)
chr8 (57-164)||(30846437-30846544)
chr8 (57-164)||(14197659-14197766)
chr8 (57-165)||(37657846-37657954)
chr8 (57-137)||(39439785-39439865)
chr8 (57-158)||(39440540-39440640)
chr8 (57-121)||(41714646-41714710)
chr8 (57-121)||(41715208-41715272)
chr8 (57-121)||(37658485-37658549)
chr8 (98-137)||(35759220-35759259)
chr8 (98-137)||(41348172-41348211)
chr8 (115-164)||(42112530-42112579)
chr8 (109-164)||(31408168-31408223)
chr8 (102-137)||(41092200-41092235)
chr8 (94-136)||(4374474-4374516)
chr8 (102-164)||(35387450-35387514)
chr8 (101-157)||(42573586-42573643)
[»] chr4 (23 HSPs)
chr4 (57-164)||(6934443-6934550)
chr4 (57-164)||(20174970-20175077)
chr4 (57-164)||(5235374-5235481)
chr4 (57-164)||(5235827-5235934)
chr4 (57-164)||(6933821-6933928)
chr4 (57-164)||(19860330-19860437)
chr4 (57-164)||(19860813-19860920)
chr4 (94-160)||(39412769-39412835)
chr4 (102-164)||(39413607-39413669)
chr4 (57-158)||(52532129-52532230)
chr4 (61-137)||(52532375-52532451)
chr4 (57-112)||(20175366-20175421)
chr4 (57-127)||(5259269-5259339)
chr4 (102-158)||(3167463-3167519)
chr4 (57-121)||(30213856-30213920)
chr4 (98-150)||(25655620-25655673)
chr4 (101-137)||(31910582-31910618)
chr4 (98-137)||(11680304-11680343)
chr4 (98-137)||(11688583-11688622)
chr4 (101-137)||(46764280-46764316)
chr4 (98-137)||(12590184-12590223)
chr4 (119-158)||(19130404-19130443)
chr4 (83-165)||(32291321-32291403)
[»] chr3 (32 HSPs)
chr3 (57-164)||(5113198-5113305)
chr3 (57-164)||(20586525-20586632)
chr3 (57-165)||(24394675-24394783)
chr3 (57-164)||(20586072-20586179)
chr3 (57-164)||(36992114-36992221)
chr3 (57-164)||(37017554-37017661)
chr3 (57-164)||(5113649-5113756)
chr3 (57-164)||(45000768-45000875)
chr3 (57-163)||(45000316-45000422)
chr3 (57-165)||(24394246-24394354)
chr3 (57-165)||(26006145-26006253)
chr3 (57-164)||(26006719-26006826)
chr3 (61-169)||(43104722-43104830)
chr3 (57-164)||(930374-930481)
chr3 (57-164)||(11442096-11442203)
chr3 (57-164)||(32474403-32474510)
chr3 (57-164)||(21166097-21166204)
chr3 (57-164)||(32473761-32473868)
chr3 (57-130)||(11441683-11441756)
chr3 (57-158)||(38000233-38000334)
chr3 (57-137)||(929938-930018)
chr3 (57-163)||(42257215-42257321)
chr3 (57-164)||(43521077-43521181)
chr3 (58-137)||(14788302-14788380)
chr3 (57-163)||(50766631-50766735)
chr3 (57-137)||(14788541-14788621)
chr3 (57-137)||(42258003-42258082)
chr3 (116-164)||(8327183-8327231)
chr3 (102-165)||(26837182-26837245)
chr3 (94-135)||(43104509-43104550)
chr3 (64-164)||(46740513-46740613)
chr3 (93-137)||(40820485-40820529)
[»] chr1 (29 HSPs)
chr1 (57-166)||(43756288-43756397)
chr1 (61-164)||(43755849-43755952)
chr1 (57-164)||(38328827-38328934)
chr1 (57-164)||(38468906-38469013)
chr1 (57-164)||(38469226-38469333)
chr1 (57-165)||(12800411-12800519)
chr1 (57-165)||(28371644-28371752)
chr1 (57-137)||(2820985-2821065)
chr1 (57-164)||(38328388-38328494)
chr1 (57-157)||(33631031-33631131)
chr1 (57-137)||(2821430-2821510)
chr1 (57-137)||(48594166-48594246)
chr1 (57-137)||(48598777-48598857)
chr1 (57-164)||(50164237-50164344)
chr1 (57-166)||(12799987-12800096)
chr1 (94-164)||(32537645-32537715)
chr1 (57-158)||(48153100-48153201)
chr1 (57-169)||(50164650-50164762)
chr1 (102-164)||(32538488-32538550)
chr1 (57-137)||(28371226-28371306)
chr1 (98-164)||(17151002-17151068)
chr1 (57-163)||(48589079-48589187)
chr1 (98-164)||(17151861-17151927)
chr1 (101-164)||(33630477-33630540)
chr1 (106-137)||(45065375-45065406)
chr1 (94-135)||(13536973-13537014)
chr1 (116-165)||(41134633-41134682)
chr1 (94-135)||(51987857-51987898)
chr1 (94-165)||(4640527-4640598)
[»] chr7 (26 HSPs)
chr7 (57-164)||(30414181-30414288)
chr7 (57-164)||(25137412-25137519)
chr7 (57-165)||(25137865-25137974)
chr7 (57-164)||(20560222-20560329)
chr7 (57-165)||(4179636-4179744)
chr7 (57-138)||(4180279-4180360)
chr7 (57-164)||(20559746-20559853)
chr7 (57-137)||(33140235-33140315)
chr7 (57-164)||(33139774-33139881)
chr7 (57-137)||(42901077-42901157)
chr7 (94-164)||(33686926-33686996)
chr7 (57-126)||(40641111-40641180)
chr7 (58-130)||(42900681-42900753)
chr7 (102-164)||(33687735-33687797)
chr7 (57-164)||(40640653-40640757)
chr7 (98-150)||(44896060-44896113)
chr7 (98-137)||(29006375-29006414)
chr7 (98-137)||(29007180-29007219)
chr7 (102-137)||(41224828-41224863)
chr7 (123-164)||(14735357-14735398)
chr7 (61-126)||(35211940-35212005)
chr7 (109-158)||(35612791-35612840)
chr7 (59-150)||(29315254-29315345)
chr7 (83-163)||(39045205-39045285)
chr7 (102-137)||(29314609-29314644)
chr7 (94-158)||(42607087-42607151)
[»] scaffold0006 (1 HSPs)
scaffold0006 (57-169)||(202224-202336)
[»] scaffold0022 (2 HSPs)
scaffold0022 (57-164)||(61574-61681)
scaffold0022 (57-118)||(62028-62089)
[»] scaffold0095 (1 HSPs)
scaffold0095 (57-158)||(42873-42973)
[»] scaffold0155 (1 HSPs)
scaffold0155 (94-137)||(17367-17410)
[»] scaffold0180 (1 HSPs)
scaffold0180 (98-137)||(23073-23112)
[»] scaffold0136 (1 HSPs)
scaffold0136 (93-158)||(22203-22269)
[»] scaffold0129 (1 HSPs)
scaffold0129 (98-157)||(42493-42553)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 7635576 - 7635683
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7635576 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 7635675  T
Q  157 acttcacc 164  Q
    ||||||||    
T  7635676 acttcacc 7635683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 18290436 - 18290544
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18290436 ctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 18290535  T
Q  157 acttcacca 165  Q
    |||||||||    
T  18290536 acttcacca 18290544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 7635231 - 7635124
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7635231 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 7635132  T
Q  157 acttcacc 164  Q
    ||||||||    
T  7635131 acttcacc 7635124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 18290322 - 18290215
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||    
T  18290322 ctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaattaactttcccatggtgggaaaaattagcttttcccatgctaa 18290223  T
Q  157 acttcacc 164  Q
    ||||||||    
T  18290222 acttcacc 18290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 4348954 - 4348847
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||| |||||||| |||||| ||||||||    
T  4348954 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaacaaactttcttatggtggaaaaaattaatctttctcatgctaa 4348855  T
Q  157 acttcacc 164  Q
    ||||||||    
T  4348854 acttcacc 4348847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 12999425 - 12999525
Alignment:
Q  64 tgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcac 163  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||||||||||    
T  12999425 tgagggagtatggtaaggatatgttcttggtttgatctaatggttaaaaactaacttgctcatggtgggaaaaattagcctttcccatgttaaacttcac 12999524  T
Q  164 c 164  Q
    |    
T  12999525 c 12999525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 28983233 - 28983340
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  28983233 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgcta 28983331  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  28983332 aacctcacc 28983340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 34717696 - 34717803
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  34717696 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgcta 34717794  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  34717795 aacctcacc 34717803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 28982888 - 28982782
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| | | ||||| |||| |||||||||||||    
T  28982888 ctagtgatgagggagtatgataaggatgtgttcttggtttgatcgaatggtcaaaaactaactttcccatgatagaaaaaagtagt-tttcccatgctaa 28982790  T
Q  157 acttcacc 164  Q
    || |||||    
T  28982789 acctcacc 28982782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 19062764 - 19062864
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||| ||| |||||||||||||    
T  19062764 ctagtgatgagggagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttctcatggtgggaaaaaagtag-ctttcccatgcta 19062862  T
Q  156 aa 157  Q
    ||    
T  19062863 aa 19062864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 34717349 - 34717242
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagtctttcccatgcta 155  Q
    ||||||||||| ||||||| |||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||| |||| ||| |||||||||||||    
T  34717349 ctagtgatgagagagtatgataaggacgtgttcttgatttgatctaatgatcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgcta 34717251  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  34717250 aacctcacc 34717242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 28535408 - 28535506
Alignment:
Q  61 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagt--ctttcccatgctaaac 158  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||  |||  ||||||||||||||||    
T  28535408 tgatgaggaagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcctatggtggaaaaaaa-agtagctttcccatgctaaac 28535506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 18605837 - 18605908
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacca 165  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  18605837 tttgatccaatggttaaaaacaaactttcccatggtggaaaaaattagcctttcccatgctaaacttaacca 18605908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 18605064 - 18605002
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  18605064 aatggttaaaaattaactttcccatggtggaaaaaattagccttttccatgctaaacttcacc 18605002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 2924952 - 2925020
Alignment:
Q  96 tgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| ||| |||||||||||||||| |||||    
T  2924952 tgatctaatggtcaaaaactaactttcctatggtgggaaaaaagtag-ctttcccatgctaaacctcacc 2925020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 10608301 - 10608340
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  10608301 atctaatggtcaaaaactaactttcccatggtgggaaaaa 10608340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 4349238 - 4349272
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttctt 91  Q
    |||||||||||||||||||||||||||||||||||    
T  4349238 ctagtgatgagggagtatggtaaggatgtgttctt 4349272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 1034788 - 1034749
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  1034788 atctaatggttaaaaactaactttcctatggtggggaaaa 1034749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 930991 - 930937
Alignment:
Q  98 atctaatggttaaaaactaac-tttcccatggtggg-aaaaattagtctttccca 150  Q
    |||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||    
T  930991 atctaatggtcaaaaactaacttttcccatggtgggaaaaaactagtctttccca 930937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 8321328 - 8321436
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8321328 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 8321427  T
Q  157 acttcacca 165  Q
    |||||||||    
T  8321428 acttcacca 8321436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 3595884 - 3595777
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3595884 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 3595785  T
Q  157 acttcacc 164  Q
    ||||||||    
T  3595784 acttcacc 3595777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 12330603 - 12330710
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12330603 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 12330702  T
Q  157 acttcacc 164  Q
    ||||||||    
T  12330703 acttcacc 12330710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 7858430 - 7858327
Alignment:
Q  61 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaactt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7858430 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaactt 7858331  T
Q  161 cacc 164  Q
    ||||    
T  7858330 cacc 7858327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 12330255 - 12330148
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12330255 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaattaactttcccatggtgggaaaaattagcctttcccatgctaa 12330156  T
Q  157 acttcacc 164  Q
    ||||||||    
T  12330155 acttcacc 12330148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 3596234 - 3596340
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3596234 ctagtgatgagggagtatagtaaggatgtgttcttggtttgatctaatggttaaaaactaattttcccatggtgggaaaaattagtctttcccatgctaa 3596333  T
Q  157 acttcac 163  Q
    |||||||    
T  3596334 acttcac 3596340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 8320982 - 8320874
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8320982 ctagtgatgagggagtatggtaaggatgtgttattggtttaatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 8320883  T
Q  157 acttcacca 165  Q
    |||||||||    
T  8320882 acttcacca 8320874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 24027294 - 24027187
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  24027294 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatagttaaaaactaacttttccatggtgggaaaaattagcctttcccatgctaa 24027195  T
Q  157 acttcacc 164  Q
    ||||||||    
T  24027194 acttcacc 24027187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 29759704 - 29759597
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  29759704 ctagtgatgggggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatagtggaaaaaattagtctttcccatgctaa 29759605  T
Q  157 acttcacc 164  Q
    ||||||||    
T  29759604 acttcacc 29759597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 24027627 - 24027732
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  24027627 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaattagccattcccatgctaa 24027726  T
Q  157 acttca 162  Q
    ||||||    
T  24027727 acttca 24027732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 7858760 - 7858867
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||   |||||||| ||||||||||| |||    
T  7858760 ctagtgatgagggagtatggtaaggatgtattcttggtttgatttaatggttaaaaactaactttcccatggtaaaaaaaattaatctttcccatgttaa 7858859  T
Q  157 acttcacc 164  Q
    ||||||||    
T  7858860 acttcacc 7858867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 5620810 - 5620917
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||     ||||||||||||||    
T  5620810 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccatgctaa 5620909  T
Q  157 acttcacc 164  Q
    || |||||    
T  5620910 acctcacc 5620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 16996970 - 16997050
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  16996970 ctagtgatgagggagtatggtaaggatgtgttcttcgtttgatctaatggtcaaaaactaactttcccatggtaggaaaaa 16997050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 31078519 - 31078456
Alignment:
Q  101 taatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31078519 taatggttaaaaactaactttcccatggtggaaaaaattagtctttcccatgctaaacttcacc 31078456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 42655681 - 42655782
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagtctttcccatgcta 155  Q
    |||||||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||| || ||| |||||||||||||    
T  42655681 ctagtgatgaggaagtatgataaggatgtgttattggtttgatctaatggtcaaaaactaatttttccatggtgggaaagaagtag-ctttcccatgcta 42655779  T
Q  156 aac 158  Q
    |||    
T  42655780 aac 42655782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 42654898 - 42654837
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||    
T  42654898 aatggttaaaaactaactttcccatggt-ggaaaaactagcctttcccatgctaaactccacc 42654837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 36912308 - 36912252
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaac 158  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||||||||||    
T  36912308 aatggttcaaaaacaactttcccatggtgggaaaaaatagcctttcccatgctaaac 36912252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 16970976 - 16971067
Alignment:
Q  59 agtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttccca 150  Q
    |||| |||||||||||| ||||  ||| |||||  || |||||||||||| |||||| ||||||||||| |||| ||||| ||||||||||||    
T  16970976 agtgttgagggagtatgataagagtgtattcttcattagatctaatggtt-aaaacttactttcccatgatgggaaaaaactagtctttccca 16971067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 17591370 - 17591424
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaa 157  Q
    ||||||| ||||  |||||||||||||||| |||||| ||||||||||||||||||    
T  17591370 aatggttcaaaaacaactttcccatggtggaaaaaat-agtctttcccatgctaaa 17591424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 35262518 - 35262452
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaa-aattagtctttcccatgctaaacttcacc 164  Q
    |||||||||| ||||| ||||||||||||||| ||||| |||||  ||||||||||||||||| ||||    
T  35262518 atctaatggtcaaaaa-taactttcccatggtaggaaacaattatcctttcccatgctaaactccacc 35262452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 35106941 - 35106879
Alignment:
Q  96 tgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaac 158  Q
    |||||| ||| ||||||| ||||||||||||| | ||||||| ||| ||||||||||| ||||    
T  35106941 tgatctgatgcttaaaaaataactttcccatgataggaaaaactagcctttcccatgccaaac 35106879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 461946 - 461986
Alignment:
Q  119 tttcccatggtgggaaaaattagtctttcccatgctaaact 159  Q
    ||||||||||||| ||||| ||| |||||||||||||||||    
T  461946 tttcccatggtggaaaaaactagcctttcccatgctaaact 461986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 25992786 - 25992746
Alignment:
Q  118 ctttcccatggtgggaaaaattagtctttcccatgctaaac 158  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  25992786 ctttcccatggtgggaaaaactagcctttcccaagctaaac 25992746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 30899497 - 30899389
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30899497 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 30899398  T
Q  157 acttcacca 165  Q
    |||||||||    
T  30899397 acttcacca 30899389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 6609984 - 6610091
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6609984 ctagtgatgagggagtatggtaaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 6610083  T
Q  157 acttcacc 164  Q
    ||||||||    
T  6610084 acttcacc 6610091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 15561648 - 15561541
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15561648 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttccaatggtgggaaaaattagtctttcccatgctaa 15561549  T
Q  157 acttcacc 164  Q
    ||||||||    
T  15561548 acttcacc 15561541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 15561981 - 15562088
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15561981 ctagtgatgagggagtatggtaaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 15562080  T
Q  157 acttcacc 164  Q
    ||||||||    
T  15562081 acttcacc 15562088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 16903838 - 16903945
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16903838 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 16903937  T
Q  157 acttcacc 164  Q
    ||||||||    
T  16903938 acttcacc 16903945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 7994162 - 7994054
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  7994162 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaattagcctttcccatactaa 7994063  T
Q  157 acttcacca 165  Q
    |||||||||    
T  7994062 acttcacca 7994054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 7994514 - 7994622
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  7994514 ctagcgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggaaaaaattagcctttcccatgctaa 7994613  T
Q  157 acttcacca 165  Q
    |||||||||    
T  7994614 acttcacca 7994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 16992332 - 16992440
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtg-ggaaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  16992332 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgaggaaaaattagcctttcccatgcta 16992431  T
Q  156 aacttcacc 164  Q
    |||||||||    
T  16992432 aacttcacc 16992440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 30899846 - 30899952
Alignment:
Q  61 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaactt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  30899846 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatagttaaaaactaactttttcatggtgggaaaaattagcctttcccatgctaaactt 30899945  T
Q  161 caccagt 167  Q
    |||||||    
T  30899946 caccagt 30899952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 6609658 - 6609552
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  6609658 ctagtgaagagggagtatggtaaggatgtgttgttggtttcatctaatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatgctaa 6609559  T
Q  157 acttcac 163  Q
    |||||||    
T  6609558 acttcac 6609552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 37996532 - 37996631
Alignment:
Q  65 gagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  37996532 gagggagtatgataaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatgatgggaaaaattagcctttcccatgctaaacttcacc 37996631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 16903504 - 16903410
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatg 152  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  16903504 ctagtgatgagggagtatggtaaggatgtgttcttg-tttgatctaatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatg 16903410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 3705444 - 3705364
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3705444 ctagtgatgagggagtatgatatggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 3705364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 16681673 - 16681566
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| || ||| |||||||||||||    
T  16681673 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggccaaaaactaactttcccatgatgggaaataactag-ctttcccatgcta 16681575  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  16681574 aacctcacc 16681566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 3705765 - 3705874
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaat---tagtctttcccatgc 153  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    ||||||| |||||||    
T  3705765 ctagtgatgaaggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtggaaaaaaaaagtagtctt-cccatgc 3705863  T
Q  154 taaacttcacc 164  Q
    ||||| |||||    
T  3705864 taaacctcacc 3705874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 44251818 - 44251741
Alignment:
Q  165 agtttcattgctttcttgatagtcttaatggatgacttcttcctttgaaacaaatatggagacgacgggattcatctc 242  Q
    ||||||| |||||||||||| ||||| | |||||||||| ||| |||||||||| ||||||||||||| |||| ||||    
T  44251818 agtttcactgctttcttgattgtcttgaaggatgacttcatcccttgaaacaaagatggagacgacggaattcgtctc 44251741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 16682213 - 16682287
Alignment:
Q  63 atgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||  ||||||||||| ||||||| |||| || ||||||||||||| |||  ||||||||||    
T  16682213 atgagggagtatggtatagatgtgttcttcgtttgatttaatagtcaaaaactaactttgccaatgtgggaaaaa 16682287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 34617719 - 34617659
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaa-aattagtctttcccatgctaaac 158  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||  ||||||||||||||||    
T  34617719 atctaatggtcaaaaa-taactttcccatggtgggaaacaattatcctttcccatgctaaac 34617659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 44263067 - 44263018
Alignment:
Q  187 tcttaatggatgacttcttcctttgaaacaaatatggagacgacgggatt 236  Q
    |||||||||| |||||| ||| |||||||||||||||||||||| |||||    
T  44263067 tcttaatggacgacttcatcccttgaaacaaatatggagacgacaggatt 44263018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 40992285 - 40992250
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||||||||||||||||||||| |||||||    
T  40992285 aatggttaaaaactaactttcccatggtaggaaaaa 40992250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 44260153 - 44260117
Alignment:
Q  165 agtttcattgctttcttgatagtcttaatggatgact 201  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  44260153 agtttcactgctttcttgataatcttaatggatgact 44260117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 4240 - 4133
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4240 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 4141  T
Q  157 acttcacc 164  Q
    ||||||||    
T  4140 acttcacc 4133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 4565 - 4673
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  4565 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaattgttaaaaactaactttcccatgatggaaaaaattagtctttcccatgctaa 4664  T
Q  157 acttcacca 165  Q
    |||||||||    
T  4665 acttcacca 4673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 30846123 - 30846016
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30846123 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtgggaaaaattagtctttcccatgctaa 30846024  T
Q  157 acttcacc 164  Q
    ||||||||    
T  30846023 acttcacc 30846016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 30846437 - 30846544
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  30846437 ctagtgatgagggagtatggtaaggatatgttcttggtttgatctaatggttaaaaactaattttcccatggtggaaaaaattagcctttcccatgctaa 30846536  T
Q  157 acttcacc 164  Q
    ||||||||    
T  30846537 acttcacc 30846544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 14197766 - 14197659
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||     ||||||||||||||    
T  14197766 ctagtgatgagggagtatgataaggatgtgttcttgctttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtaactttcccatgctaa 14197667  T
Q  157 acttcacc 164  Q
    || |||||    
T  14197666 acctcacc 14197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 37657954 - 37657846
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggt-gggaaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||| ||| |||||||||||||    
T  37657954 ctagtgatgagggagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtag-ctttcccatgcta 37657856  T
Q  156 aacttcacca 165  Q
    ||| ||||||    
T  37657855 aacctcacca 37657846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 39439865 - 39439785
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| | ||| |||||||||    
T  39439865 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatagtcaaaaactaacttttctatgatgggaaaaa 39439785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 39440540 - 39440640
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||   ||||||| ||||| |||| |||| ||||||||    
T  39440540 ctagtgatgagggagtattataaggatgtgttcttggtttgatttaatggtcaaaaactaacttttttatggtggaaaaaagtagt-tttctcatgctaa 39440638  T
Q  157 ac 158  Q
    ||    
T  39440639 ac 39440640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 41714710 - 41714646
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaacttt 121  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  41714710 ctagtgatgagggattatgataaggatgtgttcttggtttgatctaatgatcaaaaactaacttt 41714646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 41715208 - 41715272
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaacttt 121  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  41715208 ctagtgatgatggagtatgataaggatatgttcttggtttgatctaatggtcaaaaactaacttt 41715272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 37658485 - 37658549
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaacttt 121  Q
    ||||| |||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  37658485 ctagtaatgaaggagtatggtaaggacgtgttcttcgtttgatctaatggtaaaaaactaacttt 37658549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 35759220 - 35759259
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  35759220 atctaatggttaaaaactaactttcccatggtggggaaaa 35759259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 41348211 - 41348172
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  41348211 atctaatggttaaaaactaactttcccatggtggggaaaa 41348172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 42112530 - 42112579
Alignment:
Q  115 taactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||| ||||    
T  42112530 taactttcccatggtggaaaaaattagtcttttccatgcaaaactccacc 42112579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 31408168 - 31408223
Alignment:
Q  109 aaaaactaactttcccatggtggg-aaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||    
T  31408168 aaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgctaaacctcacc 31408223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 41092235 - 41092200
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||||||||||||| |||||||||||||||    
T  41092235 aatggttaaaaactaacttttccatggtgggaaaaa 41092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 4374516 - 4374474
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaaa 136  Q
    |||||||||||||||||| || |||||||| ||||||||||||    
T  4374516 tttgatctaatggttaaataccaactttcctatggtgggaaaa 4374474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 35387450 - 35387514
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaa--attagtctttcccatgctaaacttcacc 164  Q
    |||||| |||||||||||||| || ||||| ||||  |||||||||| |||||||||||| ||||    
T  35387450 aatggtcaaaaactaactttctcaaggtggaaaaaaaattagtcttttccatgctaaactccacc 35387514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 42573643 - 42573586
Alignment:
Q  101 taatggttaaaaactaactttcccatggtggga-aaaattagtctttcccatgctaaa 157  Q
    ||||||| ||||||||| |||| |||||||||| ||||||||||||| | ||||||||    
T  42573643 taatggtcaaaaactaattttctcatggtgggaaaaaattagtcttttctatgctaaa 42573586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 6934443 - 6934550
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6934443 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggaaaaaattagtctttcccatgctaa 6934542  T
Q  157 acttcacc 164  Q
    ||||||||    
T  6934543 acttcacc 6934550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 20175077 - 20174970
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20175077 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 20174978  T
Q  157 acttcacc 164  Q
    ||||||||    
T  20174977 acttcacc 20174970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 5235481 - 5235374
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5235481 ctagtgatgagtgagtatgataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 5235382  T
Q  157 acttcacc 164  Q
    ||||||||    
T  5235381 acttcacc 5235374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 5235827 - 5235934
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||    
T  5235827 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtaggaaaaattagtttttcccatgctaa 5235926  T
Q  157 acttcacc 164  Q
    ||||||||    
T  5235927 acttcacc 5235934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 6933928 - 6933821
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  6933928 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaacttttccatgatggaaaaaattagtctttcccatgctaa 6933829  T
Q  157 acttcacc 164  Q
    ||||||||    
T  6933828 acttcacc 6933821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 19860437 - 19860330
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagtctttcccatgcta 155  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||    
T  19860437 ctagtgatgagggagtatggtaagtatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatag-ctttcccatgcta 19860339  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  19860338 aacctcacc 19860330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 19860813 - 19860920
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaat-tagtctttcccatgcta 155  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||  ||||||||||||    
T  19860813 ctagtgatgagggagtatgaaaaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccacggtgggaaaaaagtagg-tttcccatgcta 19860911  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  19860912 aacctcacc 19860920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 39412835 - 39412769
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaactt 160  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  39412835 tttgatccaatggttaaaaactaactttcccatgatgggaaaaattagcctttcccatgctaaactt 39412769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 39413607 - 39413669
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  39413607 aatggttaaaaactaactttcctatggtgggaaaaattagtctttcccattctaaacttcacc 39413669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 52532230 - 52532129
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||  ||| |||| ||||||||||||||||  |||| |||||| |||||||||||||||||| |||| |||| ||||||||||||    
T  52532230 ctagtgatgagggagtataataaagatgcgttcttggtttgatctgctggtcaaaaacaaactttcccatggtgggaaaaaagtagt-tttcccatgcta 52532132  T
Q  156 aac 158  Q
    |||    
T  52532131 aac 52532129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 52532375 - 52532451
Alignment:
Q  61 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||   ||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||    
T  52532375 tgatgagggagtataacaaggatgtgttcttggtttgatctactggtcaaaaactaactttccaacggtgggaaaaa 52532451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 20175366 - 20175421
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaa 112  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  20175366 ctagtgatgagggagcatggtaaggatgtgttattggtttgatctaatggttaaaa 20175421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 5259269 - 5259339
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatg 127  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||||||||||  ||||||||||||||||||    
T  5259269 ctagtgatgaaggagtatgataaagatgtgttcttgatttgatctaatggtcgaaaactaactttcccatg 5259339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 3167463 - 3167519
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaac 158  Q
    ||||||||||||  |||||||||||||||||||||| || |||||||||||||||||    
T  3167463 aatggttaaaaaacaactttcccatggtgggaaaaagtaatctttcccatgctaaac 3167519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 30213856 - 30213920
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaacttt 121  Q
    ||||||||||||||||||| |||  || | ||||||||||||||||||||| |||||||||||||    
T  30213856 ctagtgatgagggagtatgataaaaatatattcttggtttgatctaatggtcaaaaactaacttt 30213920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 25655620 - 25655673
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttccca 150  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||||||||||    
T  25655620 atctaatggtcaaaaactaactttcccatggtgggaaaaaactagtctttccca 25655673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 31910618 - 31910582
Alignment:
Q  101 taatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  31910618 taatggttaaaaactaactttcccatggtgggaaaaa 31910582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 11680343 - 11680304
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  11680343 atctaatggtcaaaaactaactttcccatggtgggaaaaa 11680304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 11688622 - 11688583
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  11688622 atctaatggtcaaaaactaactttcccatggtgggaaaaa 11688583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 46764316 - 46764280
Alignment:
Q  101 taatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||| |||||||||||||||||||||||||||||    
T  46764316 taatggtcaaaaactaactttcccatggtgggaaaaa 46764280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 12590184 - 12590223
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  12590184 atctaatggtcaaaaactaactttcccatggtggaaaaaa 12590223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 19130404 - 19130443
Alignment:
Q  119 tttcccatggtgggaaaaattagtctttcccatgctaaac 158  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  19130404 tttcccatgatgggaaaaaatagtctttcccatgctaaac 19130443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 32291403 - 32291321
Alignment:
Q  83 tgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacca 165  Q
    |||||||||  ||| ||| || |||| ||||  ||||||||||| |||||||||| ||| |||||||| ||||||| ||||||    
T  32291403 tgtgttctttatttaatcaaagggttgaaaaacaactttcccatagtgggaaaaaatagcctttcccaggctaaacatcacca 32291321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 5113305 - 5113198
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5113305 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 5113206  T
Q  157 acttcacc 164  Q
    ||||||||    
T  5113205 acttcacc 5113198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 20586525 - 20586632
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20586525 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 20586624  T
Q  157 acttcacc 164  Q
    ||||||||    
T  20586625 acttcacc 20586632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 24394675 - 24394783
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  24394675 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcatttcccatgctaa 24394774  T
Q  157 acttcacca 165  Q
    |||||||||    
T  24394775 acttcacca 24394783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 20586179 - 20586072
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20586179 ctagtgatgagggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 20586080  T
Q  157 acttcacc 164  Q
    ||||||||    
T  20586079 acttcacc 20586072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 36992114 - 36992221
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  36992114 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatactaa 36992213  T
Q  157 acttcacc 164  Q
    ||||||||    
T  36992214 acttcacc 36992221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 37017554 - 37017661
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  37017554 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatactaa 37017653  T
Q  157 acttcacc 164  Q
    ||||||||    
T  37017654 acttcacc 37017661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 5113649 - 5113756
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  5113649 ctagtgatgagggagtatggtaaggatgtattcttggtttgatctaatggttaaaaactaactttcccatggtgggaaagattaggctttcccatgctaa 5113748  T
Q  157 acttcacc 164  Q
    ||||||||    
T  5113749 acttcacc 5113756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 45000768 - 45000875
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  45000768 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccattctaa 45000867  T
Q  157 acttcacc 164  Q
    | ||||||    
T  45000868 atttcacc 45000875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 45000422 - 45000316
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  45000422 ctagtgatgagggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatagtgggaaaaattagcctttcccatgctaa 45000323  T
Q  157 acttcac 163  Q
    |||||||    
T  45000322 acttcac 45000316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 24394354 - 24394246
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  24394354 ctagtgatgagggagtatgctaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtggaaaaaattagtctttcccatactaa 24394255  T
Q  157 acttcacca 165  Q
    |||||||||    
T  24394254 acttcacca 24394246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 26006253 - 26006145
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26006253 ctagtgatgaaggagtatggtaaggatgtgttattagtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 26006154  T
Q  157 acttcacca 165  Q
    |||||||||    
T  26006153 acttcacca 26006145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 26006719 - 26006826
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  26006719 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttctcatgatgggaaaaattagcctttcccatgctaa 26006818  T
Q  157 acttcacc 164  Q
    ||||||||    
T  26006819 acttcacc 26006826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 43104722 - 43104830
Alignment:
Q  61 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaactt 160  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||    
T  43104722 tgatgagggagtatggtaaagatgtgttcttcgtttgatctaatggttaaaaactaactttcccattatgggaaaaattagcatttcccatgctaaactt 43104821  T
Q  161 caccagttt 169  Q
    |||| ||||    
T  43104822 cacctgttt 43104830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 930374 - 930481
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  930374 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgcta 930472  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  930473 aacctcacc 930481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 11442096 - 11442203
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  11442096 ctagtgatgagggagtatgataaggatgtgttctttgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgcta 11442194  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  11442195 aacctcacc 11442203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 32474403 - 32474510
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  32474403 ctagtgatgagggagtatggtaaggatgcgttcttcgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgcta 32474501  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  32474502 aacctcacc 32474510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 21166097 - 21166204
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||     ||||||||||||||    
T  21166097 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccatgctaa 21166196  T
Q  157 acttcacc 164  Q
    || |||||    
T  21166197 acctcacc 21166204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 32473868 - 32473761
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||| |||||||||||||    
T  32473868 ctagtgatgagggagtataataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatagtgggaaaaaagtag-ctttcccatgcta 32473770  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  32473769 aacctcacc 32473761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 11441756 - 11441683
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtg 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11441756 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtg 11441683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 38000233 - 38000334
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||     ||||||||||||||    
T  38000233 ctagtgatgaggaagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaacttttccatggtgggaaaaaagcagctttcccatgctaa 38000332  T
Q  157 ac 158  Q
    ||    
T  38000333 ac 38000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 930018 - 929938
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  930018 ctagtgatgggggagtatgataaggatgtgttattggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 929938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 42257321 - 42257215
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||| |||| ||||||||||||    
T  42257321 ctagtgatgagggagtatgataaagatgtgttcttggtttgatttaatggtcaaaaactaacttttccatggtgggaaaaaagtagt-tttcccatgcta 42257223  T
Q  156 aacttcac 163  Q
    ||| ||||    
T  42257222 aacctcac 42257215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 43521181 - 43521077
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| |||||||||||    |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||    
T  43521181 ctagtgatgagggagtatgataaggatgtgta---ggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgcta 43521086  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  43521085 aacctcacc 43521077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 14788380 - 14788302
Alignment:
Q  58 tagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||    
T  14788380 tagtgatgagggagtatgataaagatgtgttcttggtttgttctaatggtcaaaaactaacttt-tcatggtgggaaaaa 14788302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 50766735 - 50766631
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||| ||| |||||||||||||    
T  50766735 ctagtgatgagg-agtatgataagaatgtgttcttggtttgatctaatggtcaaaaattaacttt-ccatggtgggaaaaaagtag-ctttcccatgcta 50766639  T
Q  156 aacttcac 163  Q
    ||| ||||    
T  50766638 aacctcac 50766631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 14788541 - 14788621
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||| ||||||| |||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||| | |||||||    
T  14788541 ctagcgatgaggaagtatgataagaatgtcttcttggtttgatctaatggtcaaaaactaactttcccatgataggaaaaa 14788621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 42258003 - 42258082
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| |||| ||||||| ||| |||||||||||||| ||||||||||||||| ||| |||||||||    
T  42258003 ctagtgatgagggagtatgataag-atgtgttattgatttgatctaatggtcaaaaactaactttccaatgatgggaaaaa 42258082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 8327183 - 8327231
Alignment:
Q  116 aactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  8327183 aactttcccatggtggaaaaaattagtctttcccatgctaaactccacc 8327231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 26837182 - 26837245
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacca 165  Q
    |||||||||||||||| ||||||||||||||| |||  || ||||||||||||||||| |||||    
T  26837182 aatggttaaaaactaattttcccatggtgggataaacaagcctttcccatgctaaactccacca 26837245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 43104509 - 43104550
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaa 135  Q
    |||||||||||||||||| || |||||||||||| |||||||    
T  43104509 tttgatctaatggttaaataccaactttcccatgatgggaaa 43104550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 46740513 - 46740613
Alignment:
Q  64 tgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgctaaacttca 162  Q
    |||||||||||| ||||  |||||| ||  ||| ||| |||| |||||| || |||||||||||||||| ||||| |||||||| ||| ||||||| |||    
T  46740513 tgagggagtatgataagagtgtgtttttcatttaatccaatgattaaaa-cttactttcccatggtgggaaaaaactagtcttttccaggctaaacctca 46740611  T
Q  163 cc 164  Q
    ||    
T  46740612 cc 46740613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 40820485 - 40820529
Alignment:
Q  93 gtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||| ||| |  ||||||||||||||||||||||    
T  40820485 gtttgatctaatggtaaaatatcaactttcccatggtgggaaaaa 40820529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 43756288 - 43756397
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43756288 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatttaatggttaaaaactaactttcccatggtggaaaaaattagtctttcccatgctaa 43756387  T
Q  157 acttcaccag 166  Q
    ||||||||||    
T  43756388 acttcaccag 43756397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 43755952 - 43755849
Alignment:
Q  61 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaactt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43755952 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaactt 43755853  T
Q  161 cacc 164  Q
    ||||    
T  43755852 cacc 43755849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 38328827 - 38328934
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38328827 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatgattaaaaactaactttcccatgatgggaaaaattagtctttcccatgctaa 38328926  T
Q  157 acttcacc 164  Q
    ||||||||    
T  38328927 acttcacc 38328934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 38469013 - 38468906
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38469013 ctagtgatgagggagtatggtaaggatgtgttcttgatttaatataatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 38468914  T
Q  157 acttcacc 164  Q
    ||||||||    
T  38468913 acttcacc 38468906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 38469226 - 38469333
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38469226 ctagtgatgatggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggtggaaaaaattagcctttcccatgctaa 38469325  T
Q  157 acttcacc 164  Q
    ||||||||    
T  38469326 acttcacc 38469333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 12800411 - 12800519
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  12800411 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagt-tttcccatgcta 12800509  T
Q  156 aacttcacca 165  Q
    ||| ||||||    
T  12800510 aacctcacca 12800519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 28371644 - 28371752
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  28371644 ctagtgatgagggagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgcta 28371742  T
Q  156 aacttcacca 165  Q
    ||| ||||||    
T  28371743 aacctcacca 28371752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 2821065 - 2820985
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2821065 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 2820985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 38328494 - 38328388
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | || |||||||| |||||  |||||||    
T  38328494 ctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaactaacttttccatgatagg-aaaattagcctttcttatgctaa 38328396  T
Q  157 acttcacc 164  Q
    ||||||||    
T  38328395 acttcacc 38328388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 33631031 - 33631131
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||| |||| ||||||||||||    
T  33631031 ctagtgatgagggagtatggtaaggatgtgttcttcgtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtagt-tttcccatgcta 33631129  T
Q  156 aa 157  Q
    ||    
T  33631130 aa 33631131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 2821430 - 2821510
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  2821430 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaattaactttcccatggtgggaaaaa 2821510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 48594166 - 48594246
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  48594166 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaa 48594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 48598777 - 48598857
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  48598777 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaa 48598857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 50164344 - 50164237
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||| ||||| |||| ||||||||||||    
T  50164344 ctagtaatgagggagtatgataaggatgtattcttggtttgatctaatggtcataaactaactttcccatagtgggaaaaaagtagt-tttcccatgcta 50164246  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  50164245 aacctcacc 50164237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 12800096 - 12799987
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggt-gggaaaaattagtctttcccatgcta 155  Q
    |||||||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| |  ||||| ||| ||||||||| |||    
T  12800096 ctagtgatgaggaagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtag-ctttcccatacta 12799998  T
Q  156 aacttcaccag 166  Q
    ||| |||||||    
T  12799997 aacctcaccag 12799987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 32537715 - 32537645
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  32537715 tttgatccaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgttaaacttcacc 32537645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 48153100 - 48153201
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 155  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||  |||| ||||| ||| |||||||||||||    
T  48153100 ctagtgatgaaggagtatgataaggatgtgttcttggtttgatctaatgatcaaaaactaactttcccatattgggaaaaaagtag-ctttcccatgcta 48153198  T
Q  156 aac 158  Q
    |||    
T  48153199 aac 48153201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 50164650 - 50164762
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgg-gaaaaattagtctttcccatgcta 155  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||  ||||| |||| |||||||| |||    
T  50164650 ctagtgatgaaggagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcctatggtggaaaaaaagtagt-tttcccatacta 50164748  T
Q  156 aacttcaccagttt 169  Q
    ||| ||||| ||||    
T  50164749 aacctcaccggttt 50164762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 32538488 - 32538550
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  32538488 aatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatgctaaacttcacc 32538550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 28371306 - 28371226
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||  |||||| |||||||    
T  28371306 ctagtgatgagagagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttttcatggtaggaaaaa 28371226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 17151068 - 17151002
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    ||||| |||| ||||| |||||||||||||||||||||||  || |||||||||||||||| |||||    
T  17151068 atctagtggtcaaaaaataactttcccatggtgggaaaaaccagcctttcccatgctaaacctcacc 17151002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 48589079 - 48589187
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagt--ctttcccatgct 154  Q
    |||||||| | | |||||| |||||||||||||||| ||||||||||| ||  |||||||| ||||||||||| | |||||  |||   |||||||||||    
T  48589079 ctagtgattatgaagtatgataaggatgtgttcttgatttgatctaatcgtcgaaaactaattttcccatggtagaaaaaaaaagtagttttcccatgct 48589178  T
Q  155 aaacttcac 163  Q
    |||| ||||    
T  48589179 aaacctcac 48589187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 17151861 - 17151927
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgg-gaaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||||| |||||||||||||||||||||||  ||||| ||| |||||||||||||||| |||||    
T  17151861 atctaatggtcaaaaactaactttcccatggtggaaaaaaagtag-ctttcccatgctaaacctcacc 17151927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 33630540 - 33630477
Alignment:
Q  101 taatggttaaaaactaactttcccatggtgggaaa-aattagtctttcccatgctaaacttcacc 164  Q
    ||||||| ||||||||||||||||||||||| ||| || ||| |||||||||||||||| |||||    
T  33630540 taatggtcaaaaactaactttcccatggtggaaaataagtag-ctttcccatgctaaacctcacc 33630477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 45065375 - 45065406
Alignment:
Q  106 gttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||||||||||||||||    
T  45065375 gttaaaaactaactttcccatggtgggaaaaa 45065406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 13536973 - 13537014
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaa 135  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  13536973 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 13537014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 41134633 - 41134682
Alignment:
Q  116 aactttcccatggtgggaaaaattagtctttcccatgctaaacttcacca 165  Q
    |||||||||||||||||||||| |||  |||| |||||||||| ||||||    
T  41134633 aactttcccatggtgggaaaaactagcatttctcatgctaaacctcacca 41134682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 51987898 - 51987857
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaa 135  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  51987898 tttgatctaatggttaaaaaaatactttcccatggtgggaaa 51987857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 4640598 - 4640527
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagtctttcccatgctaaacttcacca 165  Q
    ||||||||||||||| |||| || |||||||||||||||||| ||||   |||| |||||||||||| |||||    
T  4640598 tttgatctaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttaccatgctaaactccacca 4640527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 30414288 - 30414181
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  30414288 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatactaa 30414189  T
Q  157 acttcacc 164  Q
    ||||||||    
T  30414188 acttcacc 30414181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 25137519 - 25137412
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25137519 ctagtgatgagggagtatggtaaggatgtgttattgatttgatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaa 25137420  T
Q  157 acttcacc 164  Q
    ||||||||    
T  25137419 acttcacc 25137412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 25137865 - 25137974
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttgg-tttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25137865 ctagtgatgagggagtatggtaaggatgtgttctttgatttgatctaatggttaaaaactaattttcccatggtgggaaaaattagtctttcccatgcta 25137964  T
Q  156 aacttcacca 165  Q
    ||||||||||    
T  25137965 aacttcacca 25137974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 20560222 - 20560329
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaat-tagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  20560222 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatatag-ctttcccatgcta 20560320  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  20560321 aacctcacc 20560329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 4179744 - 4179636
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| |||| |||| |||||||    
T  4179744 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggtcaaatactaactttcccatggtgggaaaaaaatagt-tttctcatgcta 4179646  T
Q  156 aacttcacca 165  Q
    ||| ||||||    
T  4179645 aacctcacca 4179636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 4180279 - 4180360
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaat 138  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  4180279 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaat 4180360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 20559853 - 20559746
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgg-gaaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||  ||||| ||| |||||||||||||    
T  20559853 ctagtgatgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaaaatag-ctttcccatgcta 20559755  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  20559754 aacctcacc 20559746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 33140235 - 33140315
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  33140235 ctagtgatgagggagtatgataaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 33140315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 33139881 - 33139774
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgg-gaaaaattagtctttcccatgcta 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||  ||||| ||| |||||||||||||    
T  33139881 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaaccaactttctcatggtggaaaaaaagtag-ctttcccatgcta 33139783  T
Q  156 aacttcacc 164  Q
    ||| |||||    
T  33139782 aacctcacc 33139774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 42901077 - 42901157
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42901077 ctagtgatgagggagtatgataacaatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 42901157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 33686996 - 33686926
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  33686996 tttgatccgatggttaaaaactaactttcccatggtgggaaaaattaacctttcccatgctaaacttcacc 33686926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 40641111 - 40641180
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccat 126  Q
    |||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  40641111 ctagtgataagggagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccat 40641180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 42900753 - 42900681
Alignment:
Q  58 tagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtg 130  Q
    |||||||||  ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  42900753 tagtgatgaacgagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatggtg 42900681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 33687735 - 33687797
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  33687735 aatggttaaaaactaactttctcatggtggaaaaaattagcctttcccatgctaaacttcacc 33687797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 40640757 - 40640653
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||| ||||| |||||||||||||||||| ||  || ||||| || | |||||||||||||    
T  40640757 ctagtgatgagggagaatgataatgatgtgttcttggtttgatttaatgattaaaaactaactttcccgtg--ggaaaaaagtaat-tttcccatgctaa 40640661  T
Q  157 acttcacc 164  Q
    || |||||    
T  40640660 acctcacc 40640653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 44896113 - 44896060
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggt-gggaaaaattagtctttccca 150  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  44896113 atctaatggttaaaaactaactttcccatggtggggaaaaactagtctttccca 44896060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 29006414 - 29006375
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29006414 atctaatggttaaaaactaactttcccatggtgggaaaaa 29006375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 29007180 - 29007219
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29007180 atctaatggttaaaaactaactttcccatggtgggaaaaa 29007219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 41224828 - 41224863
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||||||||||||||||||||||||||||    
T  41224828 aatggttaaaaactaactttcccatggtgggaaaaa 41224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 14735398 - 14735357
Alignment:
Q  123 ccatggtgggaaaaattagtctttcccatgctaaacttcacc 164  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  14735398 ccatggtgggaaaaaatagtctttcccatgctaaactccacc 14735357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 35212005 - 35211940
Alignment:
Q  61 tgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccat 126  Q
    |||||| | |||||| |||| ||||||||||| |||||| ||||||| ||||||||||||| ||||    
T  35212005 tgatgatgaagtatgataagaatgtgttcttgatttgatttaatggtcaaaaactaacttttccat 35211940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 35612840 - 35612791
Alignment:
Q  109 aaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaac 158  Q
    ||||||||| ||| |||||||||||||||| || ||||||||||||||||    
T  35612840 aaaaactaatttttccatggtgggaaaaatcagcctttcccatgctaaac 35612791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 29315254 - 29315345
Alignment:
Q  59 agtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttccca 150  Q
    |||| |||||||||||| ||||  ||| |||||  || |||||||||||| |||||| ||||||||||| |||| ||||| ||||||||||||    
T  29315254 agtgttgagggagtatgataagagtgtattcttcattagatctaatggtt-aaaacttactttcccatgatgggaaaaaactagtctttccca 29315345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 39045205 - 39045285
Alignment:
Q  83 tgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaacttcac 163  Q
    |||||||||  ||| ||| || |||| ||||  |||||| ||||||||||||||| ||| |||||||||||||||| ||||    
T  39045205 tgtgttctttatttaatcaaagggttgaaaaacaacttttccatggtgggaaaaagtagcctttcccatgctaaacatcac 39045285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 29314644 - 29314609
Alignment:
Q  102 aatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    |||||||||||||||||||||||||||||| |||||    
T  29314644 aatggttaaaaactaactttcccatggtggaaaaaa 29314609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 42607151 - 42607087
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagtctttcccatgctaaac 158  Q
    |||||||||||||  |||||| |||||||||||||||||||| ||||   ||||||||||||||||    
T  42607151 tttgatctaatggacaaaaac-aactttcccatggtgggaaacaattcccctttcccatgctaaac 42607087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 202224 - 202336
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||    
T  202224 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatttaatggttaaaaactaacttttccatggtgggaaaaattagcctttcctatactaa 202323  T
Q  157 acttcaccagttt 169  Q
    |||||||||||||    
T  202324 acttcaccagttt 202336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 61681 - 61574
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  61681 ctagtgatgagggagtatgagaaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaattagcctttcccatgctaa 61582  T
Q  157 acttcacc 164  Q
    ||||||||    
T  61581 acttcacc 61574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 62028 - 62089
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaac 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||    
T  62028 ctagtgatgagggagtatggtaaggatgtgatcttggtttgatctaatgctaaaaaactaac 62089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 42873 - 42973
Alignment:
Q  57 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaa 156  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||   ||||||| ||||| |||| |||| ||||||||    
T  42873 ctagtgatgagggagtattataaggatgtgttcttggtttgatttaatggtcaaaaactaacttttttatggtggaaaaaagtagt-tttctcatgctaa 42971  T
Q  157 ac 158  Q
    ||    
T  42972 ac 42973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 17410 - 17367
Alignment:
Q  94 tttgatctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  17410 tttgatcaaatggttaaaaactaactttcccatggtgggaaaaa 17367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 23073 - 23112
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgggaaaaa 137  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  23073 atctaatggttcaaaactaactttcccatgatgggaaaaa 23112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 22203 - 22269
Alignment:
Q  93 gtttgatctaatggttaaaaactaactttcccatggtgggaaaaattagt--ctttcccatgctaaac 158  Q
    ||||||||||||||| |||||| || ||||||||||||| |||||  |||  ||||||||||||||||    
T  22203 gtttgatctaatggtcaaaaacaaattttcccatggtggaaaaaaa-agtagctttcccatgctaaac 22269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 42553 - 42493
Alignment:
Q  98 atctaatggttaaaaactaactttcccatggtgg-gaaaaattagtctttcccatgctaaa 157  Q
    ||||||||||| ||| | ||||||||||||||||  ||||| ||| |||||||||||||||    
T  42553 atctaatggtttaaacccaactttcccatggtggaaaaaaactagcctttcccatgctaaa 42493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University