View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_high_23 (Length: 239)
Name: NF10740_high_23
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36347555 - 36347773
Alignment:
| Q |
1 |
ttctttatacaaatctcttgagcatatattacacacaaaagcaaggggggattaagttaaaatttgaaattaccggccaagtcttaattctaactccatt |
100 |
Q |
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| T |
36347555 |
ttctttatacaaatctcttgagcatatattacacacaaaagcaaggggggattaaattaaaatttgaaattaccggccaagtcttaattctaactccatt |
36347654 |
T |
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| Q |
101 |
tgtagttccagaaatcttagctccattcaccattactcccgaaacaatgtccttggattttccagcccccaagcttccaatactaagaagatatatataa |
200 |
Q |
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| T |
36347655 |
tgtagttccagaaatcttagctccattcaccattactcccgaaacaatgtccttggattttccagcccccaagcttccaatact---aagatatatataa |
36347751 |
T |
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| Q |
201 |
atcattgcaaataaaataaaat |
222 |
Q |
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| T |
36347752 |
atcattgcaaataaaataaaat |
36347773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 214
Target Start/End: Original strand, 36358889 - 36359031
Alignment:
| Q |
67 |
aaattaccggccaagtcttaattctaactccatttgtagttccagaaatcttagctccattcaccattactcccgaaacaatgtccttggattttccagc |
166 |
Q |
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| T |
36358889 |
aaattaccggccatgtcttaattctaactccatttgtagttccagaaatcttagctccattcactaacactccagaaacaaagtccttggattttccagc |
36358988 |
T |
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| Q |
167 |
ccccaagcttccaatactaagaagatatatataaatcattgcaaataa |
214 |
Q |
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| T |
36358989 |
ccccaaacttccaatact-----gagatatataaatcattgcaaataa |
36359031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 21183885 - 21183974
Alignment:
| Q |
68 |
aattaccggccaagtcttaattctaactccatttgtagttccagaaatcttagctccattcaccattactcccgaaacaatgtccttgga |
157 |
Q |
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| T |
21183885 |
aattacctgccatgtcttaattcttactccattagtagttctagataatttagctccattcacagttattcctgaaacaaattccttgga |
21183974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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