View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_high_5 (Length: 367)
Name: NF10740_high_5
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 36170805 - 36170449
Alignment:
| Q |
1 |
aaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatgccactttcaaagccaactcttgaatcgaaacttcaccgtgtcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36170805 |
aaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatgccactttcaaagctaactcttgaatcgaaacttcaccgtgtcg |
36170706 |
T |
|
| Q |
101 |
aacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattgttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170705 |
aacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattgttatt |
36170606 |
T |
|
| Q |
201 |
tcctttgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttctctaatcaccgtttgcctaaccaactcatctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36170605 |
tcctttgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttctctaatcaccatttgcctaaccaactcatctc |
36170506 |
T |
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| Q |
301 |
caaaggcaatattctgaatgaaccctattgaattcacctgaattgcttcctcctttg |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170505 |
caaaggcaatattctgaatgaaccctattgaattcacctgaattgcttcctcctttg |
36170449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 1286237 - 1286394
Alignment:
| Q |
1 |
aaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatgccactttcaaagccaactcttgaatcgaaacttcaccgtgtcg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286237 |
aaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatgccactttcaaagccaactcttgaatcgaaacttcaccgtgtcg |
1286336 |
T |
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| Q |
101 |
aacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagcta |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286337 |
aacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagcta |
1286394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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