View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_high_6 (Length: 342)
Name: NF10740_high_6
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 325
Target Start/End: Original strand, 21597874 - 21598174
Alignment:
| Q |
25 |
gagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgagacgagcttcttgacctgtaacgacgaagataccagagccaacaac |
124 |
Q |
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| T |
21597874 |
gagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgaaacgagcttcttgaccggtaacgacgaagataccagagccaacgac |
21597973 |
T |
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| Q |
125 |
agcgccgaaagcgagccatgttaagtcccaccaagtgagacaacgagtcattgtattttcactagctttgggaaggacgagaagttcatgagagtctgtt |
224 |
Q |
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| T |
21597974 |
agcgccgaaagcgagccatgttaagtcccaccaagtgagacaacgagtcattgtattttcactggctttgggaaggacgagaagttcatgggagtctgtt |
21598073 |
T |
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| Q |
225 |
gatcggttgaggagacggtcttttagacgtgggcaggtgtttgctaaggcggttcgataggtttctccggtttggaaagatggttctgggaagaaatctt |
324 |
Q |
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| T |
21598074 |
gatcggtttaggagacggtcttttagacgtgggcaggtgtttgctaaggcggttcgataggtttctccggtttggaaagatggttctgggaagaaatctt |
21598173 |
T |
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| Q |
325 |
g |
325 |
Q |
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| T |
21598174 |
g |
21598174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 11987638 - 11987687
Alignment:
| Q |
25 |
gagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagca |
74 |
Q |
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|||| ||||| ||||| |||||||| |||||||||||||||||||||||| |
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| T |
11987638 |
gagctgagaatcctgaagcggcgtaggagaggataatggaaggaccagca |
11987687 |
T |
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