View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10740_high_9 (Length: 318)

Name: NF10740_high_9
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10740_high_9
NF10740_high_9
[»] chr4 (1 HSPs)
chr4 (20-310)||(49732410-49732700)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 49732410 - 49732700
Alignment:
Q  20 atatgattatgttatatattgtatccgttgatgagatgagaccatttattcaatggtaatgcagcatgattaattatgggatcgccaaaaatgatgcacc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49732410 atatgattatgttatatattgtatccgttgatgagatgagaccatttattcaatggtaatgcagcatgattaattatgggatcgccaaaaatgatgcacc 49732509  T
Q  120 agtttgctattttgcagtaagttttggctatgtgactgtttcccttctt----ctagctagctagcgacgaaatgaaaggatgtgtcgttgtatagtctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49732510 agtttgctattttgcagtaagttttggctatgtgactgtttcccttcttctagctagctagctagcgacgaaatgaaaggatgtgtcgttgtatagtctt 49732609  T
Q  216 ttgcggcgttgtttaatagggtgacctgacacaaacaagcaatgaccctgaaaatcagattaggttcggggatgtgtatttatttgtttcttctc 310  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49732610 ttgcggcgttgtttaatagggtgacctgac----acaagcaatgaccctgaaaatcagattaggttcggggacgtgtatttatttgtttcttctc 49732700  T

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