View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_1 (Length: 656)
Name: NF10740_low_1
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 439 - 641
Target Start/End: Complemental strand, 22192577 - 22192376
Alignment:
| Q |
439 |
agtccaaacacatacatactacagtgctcttctcttggaatagaccagggcgagctgcttctattaccttcaaacccaggaaaagggaaaaacattagac |
538 |
Q |
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| T |
22192577 |
agtccaaacacatacatactacagtgctcttctcttggaatagaccagggcgagctgcttctattaccttcaaacccaggaaaaggggaaaacattagac |
22192478 |
T |
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| Q |
539 |
atgaacgattcactttgcttacctaagcaagttaccctaaatagtgcacgataaccatatatttaaagaaacaaaaggaaataccatcagtttctgaaga |
638 |
Q |
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| T |
22192477 |
atgaacgattcgctttgctt-cctaagcaagttaccctaaatagtgcacgataaccatatatttaaagaaacaaaaggaaataccatcagtttctgaaga |
22192379 |
T |
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| Q |
639 |
aag |
641 |
Q |
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||| |
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| T |
22192378 |
aag |
22192376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 116 - 404
Target Start/End: Complemental strand, 20117703 - 20117403
Alignment:
| Q |
116 |
tagcatcttaaaaataaactgaaataattattttatctgaagcataaaatgtgtacctaagtaaggagcataaactgaaacaaagaagaataagaggtca |
215 |
Q |
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| T |
20117703 |
tagcatcttaaacataaaccgaaatactaagttcttctgaagcataaaacgtgtaactatgtaagaagcataaactgaaataaagaagaataagcggtca |
20117604 |
T |
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| Q |
216 |
taagatagggcagaaaatgtgaaaaaataggtgcatcat--taccagatgcattgttctgc----tcagc------ctttccacaatacacatagtcaag |
303 |
Q |
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| T |
20117603 |
taatatagcgcagaaaatgtcaaaaagtaggtgtatcgtgttaccagatgcagtgttctgcctcttcagttgacagcattccgcaatacacatactcaat |
20117504 |
T |
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| Q |
304 |
ccaatgtagttttatacaaaacaaagatcttaagttttctacgaataaaaatactgaaaatattagaattttcttcatttaccattttgattttcaactc |
403 |
Q |
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| T |
20117503 |
ccaatgtagttttatacaaaacaaagatcttaagttttctacaaataaaaatactgaaaatatgagaattttcttcatttaccattttgaatctcaactc |
20117404 |
T |
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| Q |
404 |
t |
404 |
Q |
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| T |
20117403 |
t |
20117403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 407 - 605
Target Start/End: Complemental strand, 20016209 - 20016003
Alignment:
| Q |
407 |
ttttttgggaaacaatcctaaatgagtctaaaagtccaaacacatacatactacagtgctcttctcttggaatagaccagggcgagctgcttctattacc |
506 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||||||||||| | || || | |||||||||||| |||| |
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| T |
20016209 |
ttttttgggaaacaaacctaaatgagtctaaaagtccaaacacatacctattacattgctcttctcttggaacaaacaagtgtgagctgcttctagtacc |
20016110 |
T |
|
| Q |
507 |
ttcaaacccaggaaaagggaaaaacattagacatgaacgattcactttgcttaccta----------agcaagttaccctaaatagtgcacgataaccat |
596 |
Q |
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| T |
20016109 |
tttaaaccctagaaaagggaaaaacatt--acatgaacgattctctttgcttacctatgaaagttatagcaagttaccctaaatagtgcatgataaccat |
20016012 |
T |
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| Q |
597 |
atatttaaa |
605 |
Q |
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| T |
20016011 |
aaatttaaa |
20016003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 483
Target Start/End: Complemental strand, 20035349 - 20035273
Alignment:
| Q |
407 |
ttttttgggaaacaatcctaaatgagtctaaaagtccaaacacatacatactacagtgctcttctcttggaatagac |
483 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||| ||||| || |||| ||||||||||||||||||||| |
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| T |
20035349 |
ttttttgggaaacaaacctaaatgagtctaaaattccaaacgcatacctattacattgctcttctcttggaatagac |
20035273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 20117767 - 20117722
Alignment:
| Q |
11 |
atttagcactcaataagaattattccaaactttggcacttcttatc |
56 |
Q |
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| T |
20117767 |
atttagcactcaataagaaatattccaaactttggcacttcttatc |
20117722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 605
Target Start/End: Complemental strand, 20035234 - 20035146
Alignment:
| Q |
527 |
aaaacattagacatgaacgattcactttgcttacctaagcaagtta----------ccctaaatagtgcacgataaccatatatttaaa |
605 |
Q |
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|||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
20035234 |
aaaatattagacatgaacgattccctttgctgacctaagcaagttatagcgagttaccctaaatagtgcacgataaccatacatttaaa |
20035146 |
T |
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