View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_11 (Length: 293)
Name: NF10740_low_11
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 44069813 - 44069564
Alignment:
| Q |
28 |
cacagataaactatcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatca |
127 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44069813 |
cacaaataaactatcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagctcacaaacttgtatca |
44069714 |
T |
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| Q |
128 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069713 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaa |
44069614 |
T |
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| Q |
228 |
taaactcaaacaacataaatgacaaattaacttggcaaagtgcttccatt |
277 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44069613 |
taaactcaaacaacctaaatgacaaattaacttggcaaagtgcttccatt |
44069564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 44095062 - 44094813
Alignment:
| Q |
28 |
cacagataaactatcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatca |
127 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44095062 |
cacaaataaactatcaaccctagattcttcttcttccttccatgatattgtacttaaggttaccttggaccaagccattgaagcacacaaacttgtatca |
44094963 |
T |
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| Q |
128 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44094962 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaa |
44094863 |
T |
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| Q |
228 |
taaactcaaacaacataaatgacaaattaacttggcaaagtgcttccatt |
277 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
44094862 |
taaactcaaacaacctaaatgataaattaacttggcaaagtgcttccatt |
44094813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 44085292 - 44085541
Alignment:
| Q |
28 |
cacagataaactatcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatca |
127 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44085292 |
cacaaataaactatcaaccctagattcttcttcttccttccatgatattgtacttaaggttaccttggaccaagccattgaagctcacaaacttgtatca |
44085391 |
T |
|
| Q |
128 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085392 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaa |
44085491 |
T |
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| Q |
228 |
taaactcaaacaacataaatgacaaattaacttggcaaagtgcttccatt |
277 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
44085492 |
taaactcaaacaacctaaatgataaattaacttggcaaagtgcttccatt |
44085541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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