View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_16 (Length: 269)
Name: NF10740_low_16
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 4721520 - 4721790
Alignment:
| Q |
1 |
aacagataggcatcttctctgctaaaaggaacgtatgaattaccaaaatctaagataaggtattagtatcaaagtcgatataatgat--caattacaaaa |
98 |
Q |
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| T |
4721520 |
aacagataggcatcttctctgctaaaaggaatgtatgaattaccaaaatctaagataaggtattagtatcaaagtcgatgtagtgatgtcaattacaaaa |
4721619 |
T |
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| Q |
99 |
tattaacattagatatgatgtattcatatagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatcaaataccatgtgat |
198 |
Q |
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| T |
4721620 |
tattaacattagatatgatgtattcatctagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatcaaataccatgtgat |
4721719 |
T |
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| Q |
199 |
cgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttc |
269 |
Q |
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| T |
4721720 |
cgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcgaatgatatatgttcttc |
4721790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 54923485 - 54923641
Alignment:
| Q |
1 |
aacagataggcatcttctctgctaaaaggaacgtatgaat---taccaaaatctaagataaggtattagtatcaaagtcgatataatga--tcaattaca |
95 |
Q |
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| T |
54923485 |
aacagataggtatcttctctgctaaaaggaaaatatgaattactaccaaaatcttagataaggaattggtatcaaagccgatgttatgatgtctattacc |
54923584 |
T |
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| Q |
96 |
aaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcat |
152 |
Q |
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| T |
54923585 |
atatattaacattagctacaatatattcatttatataaggaattaatatcaaagcat |
54923641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 54923703 - 54923758
Alignment:
| Q |
214 |
aacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttc |
269 |
Q |
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| T |
54923703 |
aacttagaagatgaggatcttgattcttaattgtcttcgaataatatatgttcttc |
54923758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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