View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_2 (Length: 519)
Name: NF10740_low_2
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 3 - 503
Target Start/End: Original strand, 12120929 - 12121425
Alignment:
| Q |
3 |
cataggacaccaacaaaaggaagaaagggaaaaataagcaataaaaagatgaaatttttaatctcatgggaagaatgaagaaatacaacatgttcataga |
102 |
Q |
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| T |
12120929 |
cataggacaccaacaaaaggaagaaagggaaaaataagcgataaaaagatgaactttttaatctcatgggaagaatggagaaatacaacatgttcataga |
12121028 |
T |
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| Q |
103 |
cctcatgggagaaatacaagttacctctaatttcttagcaatgttagaaaaaggtacattagaaacttttggtggcatcgtaaagtacattttggtatta |
202 |
Q |
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| T |
12121029 |
cctcacgggagaaatacaagttacctctaacttcttagcaatgttagaaaaagttacattggaaacttttggtcgcatggtaaagtacattttggtaata |
12121128 |
T |
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| Q |
203 |
attggcacttttgtgtttcttatagacgtggtggtcatggagattagtgatgtggaagagggtcctctgattctgagaagatcattctttgcaacttttc |
302 |
Q |
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| T |
12121129 |
attggcacttttgtgtttcttatagacgtagtggtcatggagattagtgatgtggaagagggtcctctgattttgagaagatcattcctcgcaacttttc |
12121228 |
T |
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| Q |
303 |
gagcactagttgatgttgaacaaggtgatgtaatattaataacatacagtggttatctatcttacaaaggtaactcctcatgaagtaggtgattttcaag |
402 |
Q |
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| T |
12121229 |
gagcacttgttgatgttgaacaaggtgatgtaatattaagaacatacagtggttatctatcttacaaaggtaactcctcatgaagcaggtgattttcaag |
12121328 |
T |
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| Q |
403 |
cagcagagcggtgataaatggttcaatttatgggagaaaatcgaaagggtggctaaggaagtagaat-gactgattctaaagaagtggaatgggtttaag |
501 |
Q |
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| T |
12121329 |
cagcagagcggtgataaatggttcaa-----gggagaaaatcgaaaggttggctaaggaagtagaatggactgattctaaagaagtggaatgggtttaag |
12121423 |
T |
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