View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_23 (Length: 250)
Name: NF10740_low_23
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 113 - 248
Target Start/End: Complemental strand, 9820513 - 9820378
Alignment:
| Q |
113 |
ggtaagtttatatttgttagtgaaacatacattttgaacccatactgtcattactttactgtgagttaagttgatctttgtggtagaaatatgtctgatt |
212 |
Q |
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| T |
9820513 |
ggtaagtttatatttgttagtgaaacatacattttgaacccatactgtcattactttactgtgagttaagttgatctttttggtagaaatatgtctgatt |
9820414 |
T |
|
| Q |
213 |
ctaagatcattgttgcattttatctctgcttctcca |
248 |
Q |
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| T |
9820413 |
ctaagatcattgttgcattttatctttgcttttcca |
9820378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 9821238 - 9821130
Alignment:
| Q |
1 |
agttgacttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtatttacgtcaagcagtgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9821238 |
agttgacttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttctttcgtatttacgtcaagcagtgct |
9821139 |
T |
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| Q |
101 |
ccatatgat |
109 |
Q |
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||||||||| |
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| T |
9821138 |
ccatatgat |
9821130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 38874145 - 38874021
Alignment:
| Q |
113 |
ggtaagtttatatttgttagtgaaacatacattttgaacccatactgtcattactttactgtgagttaagttgatctttgtggtagaaatatgtctgatt |
212 |
Q |
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||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||| || ||||| |
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| T |
38874145 |
ggtaagtttatatttcttagtgaaacatacatcttgaacttatactgtcattacttcattgtgagttgagttgatctttgtggtagaaatacgtatgatt |
38874046 |
T |
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| Q |
213 |
ctaagatcattgttgcattttatct |
237 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
38874045 |
ctgagatcattgttgcattttatct |
38874021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 38875481 - 38875382
Alignment:
| Q |
7 |
cttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtatttacgtcaagcagtgctccatat |
106 |
Q |
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| T |
38875481 |
cttcttatgagttg---tgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagtagtgctccatat |
38875385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 38693616 - 38693718
Alignment:
| Q |
7 |
cttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtatttacgtcaagcagtgctccatat |
106 |
Q |
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|||||||||||||||||||| |||| || ||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
38693616 |
cttcttatgagttgatgtgatttttcaaaaaaccaggttagctgctttaagctggaatggtgaaggttcttttgcatttacgtcaagcagtgcttcatat |
38693715 |
T |
|
| Q |
107 |
gat |
109 |
Q |
| |
|
||| |
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|
| T |
38693716 |
gat |
38693718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 38694151 - 38694179
Alignment:
| Q |
208 |
tgattctaagatcattgttgcattttatc |
236 |
Q |
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| T |
38694151 |
tgattctaagatcattgttgcattttatc |
38694179 |
T |
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