View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_24 (Length: 250)
Name: NF10740_low_24
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 33828388 - 33828629
Alignment:
| Q |
8 |
aagcagagatgataatcatgaaaaacagaaatagagagattactcctcccacaataactacctgcaagcaaacatgattaaattttactatatctagtta |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828388 |
aagcatagatgataatcatgaaaaacagaaatagagagattactcctcccacaataactacctgcaagcaaacatgattaaattttactatatctagtta |
33828487 |
T |
|
| Q |
108 |
taaattttgaagccacatgattaactatacacaaaaatagttaattgcttacccatttgaacatatattcatggccatcattccaagtaaatgggaggtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828488 |
taaattttgaagccacatgattaactatacacaaaaatagttaattgcttacccatttgaacatatattcatggccatcattccaagtaaatgggaggtt |
33828587 |
T |
|
| Q |
208 |
catgccaaaaataccagccaccagagagaaaatagataggcc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828588 |
catgccaaaaataccagccaccagagagaaaatagataggcc |
33828629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 33839578 - 33839337
Alignment:
| Q |
8 |
aagcagagatgataatcatgaaaaacagaaatagagagattactcctcccacaataactacctgcaagcaaacatgattaaattttactatatctagtta |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33839578 |
aagcatagatgataatcatgaaaaacagaaatagagagattactcctcccacaataactacctgcaagcaaacatgattaaattttactatatctagtta |
33839479 |
T |
|
| Q |
108 |
taaattttgaagccacatgattaactatacacaaaaatagttaattgcttacccatttgaacatatattcatggccatcattccaagtaaatgggaggtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33839478 |
taaattttgaagccacatgattaactatacacaaaaatagttaattgcttacccatttgaacatatattcatggccatcattccaagtaaatgggaggtt |
33839379 |
T |
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| Q |
208 |
catgccaaaaataccagccaccagagagaaaatagataggcc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33839378 |
catgccaaaaataccagccaccagagagaaaatagataggcc |
33839337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 33806495 - 33806575
Alignment:
| Q |
155 |
cttacccatttgaacatatattcatggccatcattccaagtaaatgggaggttcatgccaaaaataccagccaccagagag |
235 |
Q |
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||||||||||||||||| ||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
33806495 |
cttacccatttgaacatgtatccatggtcatcattccaagtatatgggatgttcatgccaaaaataccagccaccagagag |
33806575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 33865965 - 33866045
Alignment:
| Q |
155 |
cttacccatttgaacatatattcatggccatcattccaagtaaatgggaggttcatgccaaaaataccagccaccagagag |
235 |
Q |
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| T |
33865965 |
cttacccatttgaacatgtatccatggtcatcattccaagtatatgggatgttcatgccaaaaataccagccaccagagag |
33866045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 33806390 - 33806464
Alignment:
| Q |
60 |
aataactacctgcaagcaaacatgattaaattttactatatctagttataaattttgaagccacatgattaactata |
136 |
Q |
| |
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|||||||||||||||| ||||||||||| || ||||| || ||||| ||||||||| ||||| ||| ||||||||| |
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| T |
33806390 |
aataactacctgcaagtaaacatgattatatgttactctacctagt--taaattttgcagccaaatgcttaactata |
33806464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 33865860 - 33865934
Alignment:
| Q |
60 |
aataactacctgcaagcaaacatgattaaattttactatatctagttataaattttgaagccacatgattaactata |
136 |
Q |
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|||||||||||||||| ||||||||||| || ||||| || ||||| ||||||||| ||||| ||| ||||||||| |
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| T |
33865860 |
aataactacctgcaagtaaacatgattatatgttactctacctagt--taaattttgcagccaaatgcttaactata |
33865934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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