View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_27 (Length: 239)
Name: NF10740_low_27
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9821484 - 9821706
Alignment:
| Q |
1 |
cccatttgaatcaactcattgtaagtcacatttttgtgtatccatttcaaagacggatgacaataagaaataagataaagaagaagaacgaacaccgcat |
100 |
Q |
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| T |
9821484 |
cccatttgaatcaactcattgtaagtcacatttttgtgtatccatttcaaagacggatgacaataagaaataagataaagaagaagaacgaacaccacat |
9821583 |
T |
|
| Q |
101 |
ttttgtgcatccatttctgaccaaatttaattacgtcttgggggagagcatctcttcaattcatcatcaatgagtatcttacaaagcgatacaagggtta |
200 |
Q |
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| T |
9821584 |
ttttgtgcatccatttctgaccaaatttaattacgtcttgggggagagcatctcttcaattcatcatcaatgagtatcttacaaagcaatacaagggtta |
9821683 |
T |
|
| Q |
201 |
caagtaataagccttcaacaata |
223 |
Q |
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| T |
9821684 |
caagtaataagcctttaacaata |
9821706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 38984662 - 38984799
Alignment:
| Q |
86 |
gaacgaacaccgcatttttgtgcatccatttctgaccaaatttaattacgtcttgggggagagcatctcttcaattcatcatcaatgagtatcttacaaa |
185 |
Q |
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| T |
38984662 |
gaacgaacaccacatatttgtatattcatttcttcccaaatttacttacgtcttaagggagaatatctctccaattaattttcaatgtgtatcttacaaa |
38984761 |
T |
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| Q |
186 |
gcgatacaagggttacaagtaataagccttcaacaata |
223 |
Q |
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| T |
38984762 |
gtgattcaatggttacaagaaataagtctttaacaata |
38984799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 8832296 - 8832228
Alignment:
| Q |
152 |
ctcttcaattcatcatcaatgagtatcttacaaagcgatacaagggttacaagtaataagccttcaaca |
220 |
Q |
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| T |
8832296 |
ctcttcaattcactatcaataagttctttacaaatagatacaagggttacaagaaataagtcttcaaca |
8832228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 24198017 - 24197946
Alignment:
| Q |
150 |
atctcttcaattcatcatcaatgagtatcttacaaagcgatacaagggttacaagtaataagccttcaacaa |
221 |
Q |
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| T |
24198017 |
atctctccaatccattatcaaagagtttcttgcaaagagatacaagggttacaagaaattagccttcaacaa |
24197946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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