View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_29 (Length: 238)
Name: NF10740_low_29
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 11960575 - 11960464
Alignment:
| Q |
56 |
gatagtatttttaaattggtagattcataa-tcaatttgtcaggataaaataaatcaattagttgaataaagattaccgtcgggtgacttatatttgctc |
154 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| || | | ||||||||||||||| |
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| T |
11960575 |
gatagtatttttaaattggtagatttataaatcaatttgtcaggacaaaataaatcaattagttgaataaagattgccattgagtgacttatatttgccg |
11960476 |
T |
|
| Q |
155 |
tcatgtgctata |
166 |
Q |
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|||||||||||| |
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| T |
11960475 |
tcatgtgctata |
11960464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 11960416 - 11960382
Alignment:
| Q |
189 |
attttaattggttgatctgcatatttacaaaattc |
223 |
Q |
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| T |
11960416 |
attttaattggttgatctgcatatttacaaaattc |
11960382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 45843212 - 45843319
Alignment:
| Q |
56 |
gatagtatttttaaattggtagattcataa-tcaatttgtcaggataaaataaatcaattagttgaataaagattaccgtcgggtgacttatatttgctc |
154 |
Q |
| |
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|||||||||||||||||| |||||||| || |||| ||| ||| ||| ||||||||||||||||||||||||| | ||| |||| ||||||||||| |
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| T |
45843212 |
gatagtatttttaaattgatagattcagaaatcaacttggcagaccaaagtaaatcaattagttgaataaagattgctgtcaagtgatttatatttgctg |
45843311 |
T |
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| Q |
155 |
tcatgtgc |
162 |
Q |
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|||||||| |
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| T |
45843312 |
tcatgtgc |
45843319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 19986512 - 19986579
Alignment:
| Q |
63 |
tttttaaattggtagattcataa-tcaatttgtcaggataaaataaatcaattagttgaataaagatt |
129 |
Q |
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| T |
19986512 |
tttttaaattggtagattcataaatcaatttgtcataacaaaataaatcagttagttaaataaagatt |
19986579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 39985163 - 39985197
Alignment:
| Q |
189 |
attttaattggttgatctgcatatttacaaaattc |
223 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39985163 |
attttaattggttgatctgcatatttacaaaattc |
39985197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 39984714 - 39984773
Alignment:
| Q |
59 |
agtatttttaaattggtagattcat-aatcaatttgtcaggataaaataaatcaattagt |
117 |
Q |
| |
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||||||||||||||||||||| ||| |||||| |||||| | ||||||||||||||||| |
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| T |
39984714 |
agtatttttaaattggtagatacataaatcaaattgtcaaaacaaaataaatcaattagt |
39984773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 39985065 - 39985116
Alignment:
| Q |
115 |
agttgaataaagattaccgtcgggtgacttatatttgctctcatgtgctata |
166 |
Q |
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|||||||||||||||||| ||| |||| ||||||||||| |||| ||||||| |
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| T |
39985065 |
agttgaataaagattaccatcgagtgatttatatttgctgtcatttgctata |
39985116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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