View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_3 (Length: 476)
Name: NF10740_low_3
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Original strand, 21597731 - 21598174
Alignment:
| Q |
16 |
agcacagacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaaca |
115 |
Q |
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| T |
21597731 |
agcaccgacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattctaaggaatgaaaacgagccaccagcaaca |
21597830 |
T |
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| Q |
116 |
ggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgagac |
215 |
Q |
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| T |
21597831 |
ggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgaaac |
21597930 |
T |
|
| Q |
216 |
gagcttcttgacctgtaacgacgaagataccagagccaacaacagcgccgaaagcgagccatgttaagtcccaccaagtgagacaacgagtcattgtatt |
315 |
Q |
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| T |
21597931 |
gagcttcttgaccggtaacgacgaagataccagagccaacgacagcgccgaaagcgagccatgttaagtcccaccaagtgagacaacgagtcattgtatt |
21598030 |
T |
|
| Q |
316 |
ttcactagctttgggaaggacgagaagttcatgagagtctgttgatcggttgaggagacggtcttttagacgtgggcaggtgtttgctaaggcggttcga |
415 |
Q |
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| T |
21598031 |
ttcactggctttgggaaggacgagaagttcatgggagtctgttgatcggtttaggagacggtcttttagacgtgggcaggtgtttgctaaggcggttcga |
21598130 |
T |
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| Q |
416 |
taggtttctccggtttggaaagatggttctgggaagaaatcttg |
459 |
Q |
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| T |
21598131 |
taggtttctccggtttggaaagatggttctgggaagaaatcttg |
21598174 |
T |
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Back To:
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Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 11987507 - 11987687
Alignment:
| Q |
28 |
agcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaacaggaacttcaacg |
127 |
Q |
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||||||||||||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||| |||| || ||||| ||||| ||||||||||| |
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| T |
11987507 |
agcttcaaggagaatattcccggcagcaatgaaagcgaggaagtcaccgagttcgattcttaggaatcaaaacgaaccaccggcaacgggaacttcaact |
11987606 |
T |
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| Q |
128 |
gcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagca |
208 |
Q |
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| T |
11987607 |
gcgaattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcggcgtaggagaggataatggaaggaccagca |
11987687 |
T |
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