View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_34 (Length: 217)
Name: NF10740_low_34
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 41750044 - 41750244
Alignment:
| Q |
1 |
ctggtgattagaggagtttgtttcgtcattgatgaatgatgaattagtaagtgtatagtatagtattagtgcatgtattgggtgatttcacatgcatgta |
100 |
Q |
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| T |
41750044 |
ctggtgattagaggagtttgtttcgtcattgatgaatgatgaattagtaagtgtatagtatagtattagtgcatgtattgggtgatttcacatgcatgta |
41750143 |
T |
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| Q |
101 |
gaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatgatagcgtatacgttacacttaattaagagtgtaggaaatatg |
200 |
Q |
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| T |
41750144 |
gaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatgataacgtatacgttaaacttaattaagagtgtaggaaatatg |
41750243 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
41750244 |
c |
41750244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 41756775 - 41756916
Alignment:
| Q |
59 |
tatagtattagtgcatgtattgggtgatttcacatgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatg |
158 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
41756775 |
tatagtattagtgcatgtattgggtgatt-cacacgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatatcgttaatg |
41756873 |
T |
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| Q |
159 |
atagcgtatacgttacacttaattaagagtgtaggaaatatgc |
201 |
Q |
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| T |
41756874 |
ataacgtatacgttacagttaattaagtgtgtaggaaatatgc |
41756916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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