View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10740_low_37 (Length: 202)
Name: NF10740_low_37
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 37684234 - 37684404
Alignment:
| Q |
13 |
gagaagaatgatatttcaaatcatcaagtgagaatcatgttatgaatgaaattttgcaagaatggatttccttcatttatcaagctcctaatttttattt |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37684234 |
gagaagaatgatatt-caaatcatcaagtgagaattatgttatgaatgaaattttgcaagtatggatttacttcatttatcaagctcctaatttttattt |
37684332 |
T |
|
| Q |
113 |
acgatagacgtatacataaacgatagattagttagatccattttaataattagactccattattgggtacaact |
186 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37684333 |
acg--agacgtatacataaacgatagattagttagatccattttagtaattagactccattattgggtacaact |
37684404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University