View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10740_low_5 (Length: 373)
Name: NF10740_low_5
Description: NF10740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10740_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 45339413 - 45339756
Alignment:
| Q |
14 |
aggtggtgcaatctttggaatcatcttcaggtcttcgactacaactcaaacggtaaatggaaaccaccgaaaatgttcaaaagggtgaaggtgattttta |
113 |
Q |
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| T |
45339413 |
aggtggtgcaatctttggaatcatcttcaggtcttcgactacaactcaaacggtaaatggaaaccaccgaaaatgttcaaaagggtgaaggtgattttta |
45339512 |
T |
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| Q |
114 |
tactcaaatatggttcatattacgtttaggtgaatttatctaaacataaatcaccccacttttaactaaaattaatttactctaaaaccacttctggaaa |
213 |
Q |
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| T |
45339513 |
tactcaaatatggttcatattacgtttaggtgaatttatctaaacataaatcaccccacttttaactaaaattaatttactctaaaaccacttctggaaa |
45339612 |
T |
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| Q |
214 |
taatagtttttacgagatgctgacatgcttaattctgatcctaacggtgctggagcaacagttggtataatcaagagttgcttctcttctatagcaggaa |
313 |
Q |
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| T |
45339613 |
taatagtttttacgagatgctgacatgcttaattctgatcctaacggtgctggagcaacagttggtataatcaagagttgcttctcttctatagcaggaa |
45339712 |
T |
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| Q |
314 |
tactcattggagtttatgttgctcagaattataaaggacctaac |
357 |
Q |
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| T |
45339713 |
tactcattggagtttatgttgctcagaattataaaggacctaac |
45339756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 45369973 - 45370009
Alignment:
| Q |
277 |
ggtataatcaagagttgcttctcttctatagcaggaa |
313 |
Q |
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| T |
45369973 |
ggtataatcaagggttgcttctcttttatagcaggaa |
45370009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 45373247 - 45373283
Alignment:
| Q |
265 |
ggagcaacagttggtataatcaagagttgcttctctt |
301 |
Q |
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| T |
45373247 |
ggagcaacaattggtataatcaagaattgcttctctt |
45373283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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