View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_high_1 (Length: 427)
Name: NF10741_high_1
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_high_1 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 269 - 417
Target Start/End: Complemental strand, 43505792 - 43505641
Alignment:
| Q |
269 |
tccatcagttatattttatgtttgggatgatcggttacattttttatttcttgatattctaatcnnnnnnnnnn--gtcaagatattctaatc-ttttta |
365 |
Q |
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| T |
43505792 |
tccatcggttatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcttttttatttttgtcaagatattctaatcattttta |
43505693 |
T |
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| Q |
366 |
tttgcatataaaaaactaagagtgctttataggccatttcattttccctttg |
417 |
Q |
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| T |
43505692 |
tttgcatataaaaaactaagagtgctatacaggccatttcattttccctttg |
43505641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 43505950 - 43505851
Alignment:
| Q |
142 |
gactttcactctaagattgacacttgctctaatacatgcttgttttacattccgtttttcattttcatttcccatataggttatgaattaactctccatt |
241 |
Q |
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| T |
43505950 |
gacttacactctaagattgacgcttgctctaatacatgcttgttttacattccatttttcattttcatttcccatataggttacgaattaactctccatt |
43505851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 39071627 - 39071531
Alignment:
| Q |
142 |
gactttcactctaagattgacacttgctctaatacatgcttgttttacattcc-gtttttcattttcatttcccatataggttatgaattaactctc |
237 |
Q |
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| T |
39071627 |
gactttcactctaagattgacacttgctctaatccatgcttcttttacattccattttttcattttcatttaccatataggttacgaattaactctc |
39071531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 39071502 - 39071409
Alignment:
| Q |
239 |
attaatacatcatgggcctattnnnnnnnntccatcagttatattttatgtttgggatgatcggttacattttttatttcttgatattctaatc |
332 |
Q |
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| T |
39071502 |
attaatacatcatgggcctattaaaaaaaatccatcggtcatattttatgtttgggatgatcggttacattttttacttcttgatattctaatc |
39071409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 39071420 - 39071350
Alignment:
| Q |
348 |
gatattctaatc-tttttatttgcatataaaaaactaagagtgctttataggccatttcattttccctttg |
417 |
Q |
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| T |
39071420 |
gatattctaatcatttttatttgcatataaaaaactaagagtgctatacaggccatttcattttccctttg |
39071350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 348090 - 348158
Alignment:
| Q |
350 |
tattctaatc-tttttatttgcatataaaaaactaagagtgctttataggccatttcattttccctttg |
417 |
Q |
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| T |
348090 |
tattctaatcatttttatttgcatatataaaactaagagtgctatataggccatttcattttccctttg |
348158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 49618 - 49678
Alignment:
| Q |
150 |
ctctaagattgacacttgctctaatacatgcttgttttacattccgtttttcattttcattt |
211 |
Q |
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| T |
49618 |
ctctaagattgacacttgctctaatacatg-tttttttgcatgccatttttcattttcattt |
49678 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 42124394 - 42124443
Alignment:
| Q |
195 |
gtttttcattttcatttcccatataggttatgaattaactctccattaat |
244 |
Q |
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| T |
42124394 |
gtttttcattttcattacccatataagttacgaaacaactctccattaat |
42124443 |
T |
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