View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_high_14 (Length: 269)
Name: NF10741_high_14
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 34751389 - 34751638
Alignment:
| Q |
1 |
aaatcatctagagagtatcctcggtgtctgaaattatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaaatttgggaaattatgatc |
100 |
Q |
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| T |
34751389 |
aaatcatctatagagtatcctcggtgtctgaaattatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaaatttgggaaattatgatc |
34751488 |
T |
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| Q |
101 |
ccgcaattatttccttctttttccaaacctgttgctgctataggcacaacactttacatatgagacacgtcaactggtgtttggacacaacacttatttc |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34751489 |
ccgcaattatttccttctttttccaaacttgttgctgctataggcacaacactttacatatgagacacgtcaattggtgtttggacacaacacttatttc |
34751588 |
T |
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| Q |
201 |
cagcaccattgaatacttcttacataacattggtcgagtccgatggacag |
250 |
Q |
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| T |
34751589 |
cagcaccattgaatacttcttacataacattggtcgagtccgatggacag |
34751638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 11979993 - 11980047
Alignment:
| Q |
28 |
ctgaaattatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaa |
82 |
Q |
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| T |
11979993 |
ctgaagttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaa |
11980047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 11953804 - 11953856
Alignment:
| Q |
28 |
ctgaaattatgaaaccccaaatttgggaaaaatttcctgaagatctatttgag |
80 |
Q |
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||||| |||||||||| ||||||||||||| || |||||||||||||||||| |
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| T |
11953804 |
ctgaagttatgaaaccagaaatttgggaaaagttccctgaagatctatttgag |
11953856 |
T |
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