View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10741_high_20 (Length: 250)

Name: NF10741_high_20
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10741_high_20
NF10741_high_20
[»] chr5 (4 HSPs)
chr5 (1-240)||(2707802-2708043)
chr5 (181-215)||(6217721-6217755)
chr5 (187-239)||(16127050-16127100)
chr5 (187-223)||(34034905-34034941)
[»] chr8 (2 HSPs)
chr8 (183-222)||(21145708-21145747)
chr8 (182-224)||(7574367-7574409)
[»] chr6 (4 HSPs)
chr6 (187-222)||(516063-516098)
chr6 (187-222)||(10219537-10219572)
chr6 (187-224)||(21020851-21020888)
chr6 (190-222)||(9307534-9307566)
[»] chr1 (7 HSPs)
chr1 (187-222)||(31134795-31134830)
chr1 (183-222)||(32670051-32670090)
chr1 (187-222)||(32669785-32669820)
chr1 (187-222)||(34177556-34177591)
chr1 (183-219)||(6541002-6541038)
chr1 (188-224)||(31406165-31406201)
chr1 (184-224)||(36144782-36144822)
[»] chr3 (6 HSPs)
chr3 (181-222)||(14984401-14984441)
chr3 (184-224)||(41898089-41898129)
chr3 (187-221)||(23567371-23567405)
chr3 (187-216)||(14984731-14984760)
chr3 (182-223)||(34294175-34294216)
chr3 (187-235)||(46848430-46848476)
[»] chr7 (2 HSPs)
chr7 (183-219)||(30839975-30840011)
chr7 (187-216)||(18942737-18942766)
[»] chr4 (3 HSPs)
chr4 (187-222)||(12034382-12034417)
chr4 (187-220)||(11298456-11298489)
chr4 (186-222)||(51151092-51151128)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2708043 - 2707802
Alignment:
Q  1 catggattcgagttccatcattgtgtaatttctgagcaatgccgatactccaacactaataagtatatatgctattcaatcatacgaatgaaaataac-a 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2708043 catggattcgagttccatcattgtgtaatttctgagcaatgccgatactccaacactaataagtatatatgctattcaatcatacgaatgaaaataacaa 2707944  T
Q  100 aatctacattgctccactcaattactatagttttagaaatatatatacaaaa-tgtgacaacaaaattagtctaaatatatgttgggataatagtcattt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  2707943 aatctacattgctccactcaattactatagttttagaaatatatatacaaaagtgtgacaacaaaattagtctaaatatatgttggggtaatagtcattt 2707844  T
Q  199 tggtccctgaatgtgtaacgagtaatgtcaaaatagtctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2707843 tggtccctgaatgtgtaacgagtaatgtcaaaatagtctctg 2707802  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 6217755 - 6217721
Alignment:
Q  181 ttgggataatagtcattttggtccctgaatgtgta 215  Q
    |||||||||||||||||||||||| ||||||||||    
T  6217755 ttgggataatagtcattttggtccatgaatgtgta 6217721  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 16127050 - 16127100
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagtaatgtcaaaatagtctct 239  Q
    |||||||||||||||||||| ||||||||| |||||  |||| ||||||||||    
T  16127050 taatagtcattttggtccctaaatgtgtaaggagta--gtcacaatagtctct 16127100  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 34034941 - 34034905
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagtaa 223  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  34034941 taatagtcattttagtccctgaatgtgtaatgagtaa 34034905  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 21145747 - 21145708
Alignment:
Q  183 gggataatagtcattttggtccctgaatgtgtaacgagta 222  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  21145747 gggataatagtcattttggttcctgaatgtgtaacgagta 21145708  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 7574367 - 7574409
Alignment:
Q  182 tgggataatagtcattttggtccctgaatgtgtaacgagtaat 224  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||    
T  7574367 tgggataatagacattttggtccttgaatgtgtaacaagtaat 7574409  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 516098 - 516063
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagta 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  516098 taatagtcattttggtccctgaatgtgtaacgagta 516063  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 10219537 - 10219572
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagta 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  10219537 taatagtcattttggtccctgaatgtgtaacgagta 10219572  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 21020851 - 21020888
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagtaat 224  Q
    |||||||||||||||||||||||| | |||||||||||    
T  21020851 taatagtcattttggtccctgaatatataacgagtaat 21020888  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 9307566 - 9307534
Alignment:
Q  190 tagtcattttggtccctgaatgtgtaacgagta 222  Q
    |||||||||| ||||||||||||||||||||||    
T  9307566 tagtcattttagtccctgaatgtgtaacgagta 9307534  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 31134830 - 31134795
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagta 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  31134830 taatagtcattttggtccctgaatgtgtaacgagta 31134795  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 32670090 - 32670051
Alignment:
Q  183 gggataatagtcattttggtccctgaatgtgtaacgagta 222  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  32670090 gggataatagtcattttgatccctgaatgtgtaacgagta 32670051  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 32669785 - 32669820
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagta 222  Q
    |||||||||||||||||| |||||||||||||||||    
T  32669785 taatagtcattttggtccatgaatgtgtaacgagta 32669820  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 34177591 - 34177556
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagta 222  Q
    |||||||||||||||||||||||||||||| |||||    
T  34177591 taatagtcattttggtccctgaatgtgtaatgagta 34177556  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 6541002 - 6541038
Alignment:
Q  183 gggataatagtcattttggtccctgaatgtgtaacga 219  Q
    |||||||||||||||||  ||||||||||||||||||    
T  6541002 gggataatagtcattttaatccctgaatgtgtaacga 6541038  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 31406165 - 31406201
Alignment:
Q  188 aatagtcattttggtccctgaatgtgtaacgagtaat 224  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  31406165 aatagtcattttcgtccctgcatgtgtaacgagtaat 31406201  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 36144782 - 36144822
Alignment:
Q  184 ggataatagtcattttggtccctgaatgtgtaacgagtaat 224  Q
    ||||||||||||||||||||| ||||| ||||| |||||||    
T  36144782 ggataatagtcattttggtccttgaatatgtaatgagtaat 36144822  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 14984401 - 14984441
Alignment:
Q  181 ttgggataatagtcattttggtccctgaatgtgtaacgagta 222  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  14984401 ttgggataatagtcattttggt-cctgaatgtgtaacgagta 14984441  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 41898129 - 41898089
Alignment:
Q  184 ggataatagtcattttggtccctgaatgtgtaacgagtaat 224  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  41898129 ggataatagttattttggtccttgaatgtgtaacgagtaat 41898089  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 23567405 - 23567371
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagt 221  Q
    |||||||||||||| ||||||||||||||||||||    
T  23567405 taatagtcattttgatccctgaatgtgtaacgagt 23567371  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 14984760 - 14984731
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaa 216  Q
    ||||||||||||||||||||||||||||||    
T  14984760 taatagtcattttggtccctgaatgtgtaa 14984731  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 34294216 - 34294175
Alignment:
Q  182 tgggataatagtcattttggtccctgaatgtgtaacgagtaa 223  Q
    ||||||||||||||||||| ||| | ||||||||||||||||    
T  34294216 tgggataatagtcattttgatccttaaatgtgtaacgagtaa 34294175  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 46848476 - 46848430
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagtaatgtcaaaatagt 235  Q
    ||||||||| |||||||||||||||||||| |||||  |||||||||||    
T  46848476 taatagtcactttggtccctgaatgtgtaatgagta--gtcaaaatagt 46848430  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 30840011 - 30839975
Alignment:
Q  183 gggataatagtcattttggtccctgaatgtgtaacga 219  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30840011 gggataatagtcattttggtccctgaatgtataacga 30839975  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 18942737 - 18942766
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaa 216  Q
    ||||||||||||||||||||||||||||||    
T  18942737 taatagtcattttggtccctgaatgtgtaa 18942766  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 12034382 - 12034417
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgagta 222  Q
    |||||||||||||||||||||||||| |||||||||    
T  12034382 taatagtcattttggtccctgaatgtataacgagta 12034417  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 11298456 - 11298489
Alignment:
Q  187 taatagtcattttggtccctgaatgtgtaacgag 220  Q
    ||||||||||||| ||||||||||||||||||||    
T  11298456 taatagtcattttagtccctgaatgtgtaacgag 11298489  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 51151128 - 51151092
Alignment:
Q  186 ataatagtcattttggtccctgaatgtgtaacgagta 222  Q
    |||||||| |||||||||| |||||||||||||||||    
T  51151128 ataatagttattttggtccttgaatgtgtaacgagta 51151092  T

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