View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10741_high_3 (Length: 403)
Name: NF10741_high_3
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 53902745 - 53902356
Alignment:
| Q |
1 |
catttctggtttgcttcatctcttagttagatttctatggagacctcagagtagagaccctgatgaattggatgatgttactgctcttcaagggcaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53902745 |
catttctggtttgcttcatctcttagttagatttctatggagacctcagagtagagaccctgatgaattggatgatgttactgctcttcaagggcaattg |
53902646 |
T |
|
| Q |
101 |
caacagctttttcatcttcatgatgctggtgttgaccaatcattcattgatacacttcctgtgtttctttacaaaactattataggattgaaagtgaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53902645 |
caacagctttttcatcttcatgatgctggtgttgaccaatcattcattgatacacttcctgtgtttctttacaaaactattataggattgaaagtgaacc |
53902546 |
T |
|
| Q |
201 |
cttttgattgtgctgtttgtttgtgtgaatttgagcatgaagataagcttaggttgttgccaaaatgtagccatgcttttcatatggagtgtattgatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53902545 |
cttttgattgtgctgtttgtttgtgtgaatttgagcatgaagataagcttaggttgttgccaaaatgtagccatgcttttcatatggagtgtattgatac |
53902446 |
T |
|
| Q |
301 |
atggcttttgtctcactctacttgtcctctttgtagagctaatttgctccatgatttcaacacaaacaattgtggttctcctttgcttct |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53902445 |
atggcttttgtctcactctacttgtcctctttgtagagctaatttgctccatgatttcaacacaaacaattgtggttctcctttggttct |
53902356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 44026783 - 44026714
Alignment:
| Q |
270 |
gccatgcttttcatatggagtgtattgatacatggcttttgtctcactctacttgtcctctttgtagagc |
339 |
Q |
| |
|
||||||||||||||||| | ||| |||| ||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
44026783 |
gccatgcttttcatatgaattgtcttgacacatggcttctctcaaactctacttgtcctctttgtagagc |
44026714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 338
Target Start/End: Complemental strand, 1873669 - 1873531
Alignment:
| Q |
200 |
ccttttgattgtgctgtttgtttgtgtgaatttgagcatgaagataagcttaggttgttgccaaaatgtagccatgcttttcatatggagtgtattgata |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | |||| ||||| || ||||| || | |||||||||||||||||||| ||||| |||| |
|
|
| T |
1873669 |
ccttttgattgtgctgtttgtttgtgtgagtttactgagaaagacaagctaagattgttacctatgtgtagccatgcttttcatataagttgtatagata |
1873570 |
T |
|
| Q |
300 |
catggcttttgtctcactctacttgtcctctttgtagag |
338 |
Q |
| |
|
| ||||| | || |||||||||||||||||||||||| |
|
|
| T |
1873569 |
cttggctactttcaaactctacttgtcctctttgtagag |
1873531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 15103854 - 15103673
Alignment:
| Q |
101 |
caacagctttttcatcttcatgatgctggtgttgaccaatcattcattgatacacttcctgtgtttctttacaaaactattataggattgaaagtgaacc |
200 |
Q |
| |
|
||||||||||| ||||||||||| | ||| | || ||| ||||||||||| |||||||||| || |||||||| || || || ||||||| | | |
|
|
| T |
15103854 |
caacagcttttcaatcttcatgattcaggtttagatcaagcattcattgatgcacttcctgttttcatttacaaagagataattggtttgaaagag---c |
15103758 |
T |
|
| Q |
201 |
cttttgattgtgctgtttgtttgtgtgaatttgagcatgaagataagcttaggttgttgccaaaatgtagccatgcttttcatat |
285 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||| | | |||||||| | || ||||| ||||| |||| ||||||||||||||| |
|
|
| T |
15103757 |
catttgattgtgctgtttgtttatgtgagtttttggaacaagataagttaagattgttaccaaattgtaaccatgcttttcatat |
15103673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University