View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10741_high_31 (Length: 229)

Name: NF10741_high_31
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10741_high_31
NF10741_high_31
[»] chr1 (1 HSPs)
chr1 (139-229)||(46574436-46574526)
[»] chr3 (1 HSPs)
chr3 (47-134)||(13858794-13858881)
[»] chr8 (1 HSPs)
chr8 (60-134)||(26052833-26052907)
[»] chr7 (1 HSPs)
chr7 (60-130)||(32028332-32028401)
[»] chr4 (2 HSPs)
chr4 (60-115)||(3924519-3924574)
chr4 (61-118)||(3908504-3908561)
[»] chr6 (1 HSPs)
chr6 (88-134)||(29088968-29089014)
[»] chr5 (1 HSPs)
chr5 (7-46)||(27871553-27871592)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 46574436 - 46574526
Alignment:
Q  139 atttggctaagtttggattaaaggtcactcaattttagttgtgtatccccattttgtagtgtaagtttaccattagtttgttcttgcattt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46574436 atttggctaagtttggattaaaggtcactcaattttagttgtgtatccccattttgtagtgtaagtttaccattaatttgttcttgcattt 46574526  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 13858881 - 13858794
Alignment:
Q  47 gtttataggtttcgatgaataatgaatgttttttcaattgttatttaaactaagatgcttttgttttggtttcattgaacgatttaat 134  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13858881 gtttataggtttcgatgaataatgaatgttttttaaattgttatttaaactaagatgcttttgttttggtttcattaaacgatttaat 13858794  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 26052833 - 26052907
Alignment:
Q  60 gatgaataatgaatgttttttcaattgttatttaaactaagatgcttttgttttggtttcattgaacgatttaat 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26052833 gatgaataatgaatgttttttcaattgttatttaaactaagatgcttttgttttggtttcattgaacgatttaat 26052907  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 32028332 - 32028401
Alignment:
Q  60 gatgaataatgaatgttttttcaattgttatttaaactaagatgcttttgttttggtttcattgaacgatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32028332 gatgaataatgaatgttttttcaattgttatttaaactaagatgc-tttgttttggtttcattgaacgatt 32028401  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 3924519 - 3924574
Alignment:
Q  60 gatgaataatgaatgttttttcaattgttatttaaactaagatgcttttgttttgg 115  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  3924519 gatgaataatgaatgttatttcaattgctatttaaactaagatgcatttgttttgg 3924574  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 3908504 - 3908561
Alignment:
Q  61 atgaataatgaatgttttttcaattgttatttaaactaagatgcttttgttttggttt 118  Q
    |||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||    
T  3908504 atgaataatgaatgttctttcaattgctaattaaactaagatgcatttgttttggttt 3908561  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 29088968 - 29089014
Alignment:
Q  88 tatttaaactaagatgcttttgttttggtttcattgaacgatttaat 134  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  29088968 tatttaaactaagatgcttttgttttggtttcatagaacgatttaat 29089014  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 27871553 - 27871592
Alignment:
Q  7 caaaagaagaagaaaaagtgattaatgttgtgttgaaagt 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27871553 caaaagaagaagaaaaagtgattaatgttgtgttgaaagt 27871592  T

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