View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_high_8 (Length: 334)
Name: NF10741_high_8
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 9486082 - 9485785
Alignment:
| Q |
19 |
cgcctccaaatcaattaatttcactaccacttgatatagcctttaccaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaag |
118 |
Q |
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| T |
9486082 |
cgcctccaaatcaattaatttcactaccacttgatatagcctttaccaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaag |
9485983 |
T |
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| Q |
119 |
aagcatgtaataacaatgaattattcacacactgcacattgctattcatgtacacaccaaccattggtggtgaagatattgttcttactttcttactttg |
218 |
Q |
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| T |
9485982 |
aagcatgtaataacaatgaattattcacacactgcacattgctattcatgtacacaccaaccattggtggtgaagatattgttcttactttcttactttg |
9485883 |
T |
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| Q |
219 |
atcatcatagcctttgatctttaaattttccattttgtgaagttgatttggnnnnnnnctagtttggattatttccatataagcacctttgttttcac |
316 |
Q |
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| T |
9485882 |
atcatcatagcctttgatctttaaattttccattttgtgaagttgatttggttttttcctagtttggattattttcatacaagcacctttgttttcac |
9485785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 48961658 - 48961543
Alignment:
| Q |
55 |
tagcctttaccaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaagaagcatgtaataacaatgaattattcacacactgca |
154 |
Q |
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||||||| |||||||||||||||||| || | ||| |||| ||||||||||| |||| ||||||||||| | | | || ||||| |||||||| | |
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| T |
48961658 |
tagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgta |
48961559 |
T |
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| Q |
155 |
cattgctattcatgta |
170 |
Q |
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| T |
48961558 |
cattgctgttcatgta |
48961543 |
T |
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