View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10741_low_1 (Length: 558)
Name: NF10741_low_1
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 9e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 81 - 302
Target Start/End: Complemental strand, 36621910 - 36621690
Alignment:
| Q |
81 |
atcttaacattaattatactttgatcgttttgtttaatctagttctattttgggttattaaaagaaagnnnnnnnnttaagagatcaaatttataatttt |
180 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36621910 |
atcttaacattaattatactttgattgttttgtttaatctagttctattttgggttattaaaagaaagaaaaaaa-ttaagagatcaaatttataatttt |
36621812 |
T |
|
| Q |
181 |
tcctaaaactaaaatgactttatataaattttcttaattacgattatttttcatttcaaacgtaattatatttccctttcctcttcacactttttatcta |
280 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36621811 |
gcctaaaattaaaatgactttatataaattttcttaattacgattatttttcatttcaaacgtaataatatttccctttcctcttcacactttttatcta |
36621712 |
T |
|
| Q |
281 |
atcaaacaatatccttaaaaaa |
302 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
36621711 |
atcaaacaatacccttaaaaaa |
36621690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 360 - 547
Target Start/End: Complemental strand, 36613838 - 36613649
Alignment:
| Q |
360 |
tcacttttcataatcgttctcacgattttcccacttatcactctctttactcaaccgagtacaccctaaagttactttctagctagctttatta--gttc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
36613838 |
tcacttttcataatcgttctcacgattttcccacttatcactctctttactcaaccgagtacaccctaaagttactttcgagctggctttattatagttc |
36613739 |
T |
|
| Q |
458 |
cgactcttattttccttctaattctaaaatcacaagaaaacagaacattattgtccttctaacttcctactcataattgatatgtttcat |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36613738 |
cgactcttattttccttctaattctaaaatcacaagaaaacagaacattattgtccttctaacttcctactcataattgacatgtttcat |
36613649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 364 - 547
Target Start/End: Complemental strand, 36621684 - 36621499
Alignment:
| Q |
364 |
ttttcataatcgttctcacgattttcccacttatcactctctttactcaaccgagtacaccctaaagttactttctagctagctttattag--ttccgac |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
36621684 |
ttttcataatcgttctcacgattttcccacttatcactctctttactcaaccgagtacaccctaaagttactttcgagctagctttattataattccgac |
36621585 |
T |
|
| Q |
462 |
tcttattttccttctaattctaaaatcacaagaaaacagaacattattgtccttctaacttcctactcataattgatatgtttcat |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36621584 |
tcttattttccttctaattctaaaatcacaagaaaacagaacattattgtccttctaacttcctactcataattgacatgtttcat |
36621499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 111 - 302
Target Start/End: Complemental strand, 36614030 - 36613840
Alignment:
| Q |
111 |
tgtttaatctagttctattttgggttattaaaagaaagnnnnnnnnttaagagatcaaatttataatttttcctaaaactaaaatgactttatataaatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36614030 |
tgtttaatctagttctattttgggttattaaaagaaagaaaaaaa-ttaagagatcaaatttataattttgcctaaaactaaaatgactttatataaatt |
36613932 |
T |
|
| Q |
211 |
ttcttaattacgattatttttcatttcaaacgtaattatatttccctttcctcttcacactttttatctaatcaaacaatatccttaaaaaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36613931 |
ttcttaattacgattatttttcatttcaaacgtaataatatttccctttcctcttcacactttttatctaatcaaacaatacccttaaaaaa |
36613840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University