View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_10 (Length: 354)
Name: NF10741_low_10
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 32679509 - 32679835
Alignment:
| Q |
13 |
cagagaagtttcattctgtttgggggagccattctcatcatcacttcaaagaagattgtttaattgaagaaggtggcaattttgatgatcacaataaagc |
112 |
Q |
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| T |
32679509 |
cagagaagtttcattctgtttgggggagccattctcatcatcacttcaaagaagattgtttaattgaagaaggtggcaattttgatgatcacaataaagc |
32679608 |
T |
|
| Q |
113 |
cctagttgtgtataacaacaaaggtcacagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatat |
212 |
Q |
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| T |
32679609 |
cctagttgtgtataacaacaaaggtcacagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatat |
32679708 |
T |
|
| Q |
213 |
gatagttactatggttatggagatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679709 |
gatagttactatggttatggagatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattg |
32679808 |
T |
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| Q |
313 |
ataaggtgaagatttgcaaggaagaag |
339 |
Q |
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| T |
32679809 |
ataaggtgaagatttgcaaggaagaag |
32679835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 32695575 - 32695925
Alignment:
| Q |
13 |
cagagaagtttcattctgtttgggggagccattctcatcatcacttcaaagaagattgtttaattgaagaa---ggtggcaattttgatgatcacaataa |
109 |
Q |
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| T |
32695575 |
cagataagtttcattctgtttgggggagccattctcatcgtcactccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgatcacaataa |
32695674 |
T |
|
| Q |
110 |
agccctagttgtgtataacaacaaaggtca------cagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaagga |
203 |
Q |
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| T |
32695675 |
agccctagttgtgtataacaacaatgctcatcatcgcacttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaa |
32695774 |
T |
|
| Q |
204 |
gatggatatgatagttactatggttatgg---------------agatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggat |
288 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||| |||||||| |
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| T |
32695775 |
gatggatatgatagttactatggttatggttatggagatgatgatgatgatgatgacaagtaccctgatttgactcacacactttttgattctgaaggat |
32695874 |
T |
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| Q |
289 |
tggattttgatggctcagtgattgataaggtgaagatttgcaaggaagaag |
339 |
Q |
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| T |
32695875 |
tggattttgctgggtcagtgattgataaggtgaagaattgtaaggaagaag |
32695925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 32686601 - 32686713
Alignment:
| Q |
79 |
aagaaggtggcaattttgatgatcacaataaagccctagttgtgtataacaacaaaggtcacagttatgaagcgttgcgaaatccaagtgaaacacaagt |
178 |
Q |
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||||||||||||||| ||||||||| |||| |||| | ||||||||| ||||||| | ||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
32686601 |
aagaaggtggcaattatgatgatcataatagagccatggttgtgtattacaacaatgctcacacttatgaggcgttgcgaaatccaagtgaaacacaagt |
32686700 |
T |
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| Q |
179 |
tgtggatgaacaa |
191 |
Q |
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| T |
32686701 |
tgtggatgaacaa |
32686713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 32686553 - 32686597
Alignment:
| Q |
13 |
cagagaagtttcattctgtttgggggagccattctcatcatcact |
57 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
32686553 |
cagataagtttcattctgtttgggggagtcattctcatcatcact |
32686597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 32686771 - 32686825
Alignment:
| Q |
285 |
ggattggattttgatggctcagtgattgataaggtgaagatttgcaaggaagaag |
339 |
Q |
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|||||||||||||| || || ||||||||||||||||||| ||| |||||||||| |
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| T |
32686771 |
ggattggattttgacggatcggtgattgataaggtgaagaattgtaaggaagaag |
32686825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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