View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_11 (Length: 341)
Name: NF10741_low_11
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 6138620 - 6138933
Alignment:
| Q |
19 |
aacatgtcgtcatcatcttcatcaacatcttggagggactttgacaacacgatgaacgacgctgctcttgcacgtgaaggaccaagtacttatggtacta |
118 |
Q |
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| T |
6138620 |
aacatgtcgtcatcatcttcatcaacatcttggagggactttgacaacacgatgaacgacgctgctcttgcacgtgcaggaccaagtacttatggtacta |
6138719 |
T |
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| Q |
119 |
cttctgctacttggtctccactttatagtcctcctcgtggtacaataggtctttttgaagatgatcgtccaattccatatcataatgcacctcattctga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6138720 |
cttctgctacttggtctccactttatagtcctcctcgtggtacaataggtctttttgaagatgatcgtccaattccatatcataatgcacctcattctga |
6138819 |
T |
|
| Q |
219 |
ttttctcactgagcctctcgatattcctagcatgttacgtcgtcaagagcatcctaggacaaacttcaatataggaagacacgatccttctcctgcttct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6138820 |
ttttctcactgagcctctcgatattcctagcatgttatgtcgtcaagagcatcctaggacaaacttcaacataggaagacacgatccttctcctgcttct |
6138919 |
T |
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| Q |
319 |
agatccgcctatgc |
332 |
Q |
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|||||||||||||| |
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| T |
6138920 |
agatccgcctatgc |
6138933 |
T |
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