View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_14 (Length: 322)
Name: NF10741_low_14
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 36964374 - 36964088
Alignment:
| Q |
19 |
ggagcagagaacatgaaagtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactgg |
118 |
Q |
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| T |
36964374 |
ggagcatagaacatgaaagtgatgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggctatgggattttcaactgg |
36964275 |
T |
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| Q |
119 |
attttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtc |
218 |
Q |
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| T |
36964274 |
attttgggtattttggggctcattaatactcattgcatcttggcgacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtc |
36964175 |
T |
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| Q |
219 |
gttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtct |
305 |
Q |
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| T |
36964174 |
gttgtcacacttaataaactgcagaggaagcttcacactcaacaacctcccatgtaatcaagctctttgtttgctctgttattgtct |
36964088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 36976159 - 36975879
Alignment:
| Q |
19 |
ggagcagagaacatgaaagtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactgg |
118 |
Q |
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| T |
36976159 |
ggagcatagaacatgaaagtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattctacataagcatggcaatgggattttcaactgg |
36976060 |
T |
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| Q |
119 |
attttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtc |
218 |
Q |
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| T |
36976059 |
attttgggtattttggggctcattaatactcattgcatcttggaggcatgcttatttccgttttctaggcaacatgaatgataagatctatgtcactgta |
36975960 |
T |
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| Q |
219 |
gttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgtta |
299 |
Q |
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| T |
36975959 |
gttgtcgcacttaataaattgcggaagaagtttcacactcaacaacctcccatgtaaccaaactctttgtttgctctgtta |
36975879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 108 - 299
Target Start/End: Complemental strand, 36970019 - 36969829
Alignment:
| Q |
108 |
ttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatct |
207 |
Q |
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| T |
36970019 |
ttttcaactgcattttgggtattttggggatctttaatactcattgcatcttggagacatgcttatttctgttttctaagcaacatgaacgataagatct |
36969920 |
T |
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| Q |
208 |
atgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgtta |
299 |
Q |
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| T |
36969919 |
atgtcactgttgttgtcacgtttaataaattgcggaggaagtttcacactcaacaacct-ccatgtaaccaaactctgtatttgctctgtta |
36969829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 36973361 - 36973230
Alignment:
| Q |
82 |
cattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
181 |
Q |
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| T |
36973361 |
cattctacataagcattgctatggggttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
36973262 |
T |
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| Q |
182 |
tctaagcaacttgaatgataagatctatgtca |
213 |
Q |
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| T |
36973261 |
tctaagcaacatgaatgataggatctaagtca |
36973230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 305
Target Start/End: Original strand, 5868950 - 5869229
Alignment:
| Q |
26 |
agaacatgaaagtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgg |
125 |
Q |
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||||||||||| ||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
5868950 |
agaacatgaaaatgacggcaaccatggagacaaggtattggggatggaaataaatccattatacataagcatggctatggggttttcaactggattttgg |
5869049 |
T |
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| Q |
126 |
gtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtca |
225 |
Q |
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| T |
5869050 |
gtattttggggatctttaatactcattgcatcttggagacatgcttatttccgttttataagcaacatgaatgataagatccatgtcactgtagttgtcg |
5869149 |
T |
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| Q |
226 |
cacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtct |
305 |
Q |
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|||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
5869150 |
cacttaataaactgcggaggaagtttcacactcaacaacctcccatgtaaccaaactctttgtttgctctgttattgtct |
5869229 |
T |
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