View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_15 (Length: 319)
Name: NF10741_low_15
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 3652795 - 3653095
Alignment:
| Q |
1 |
tggactgaccgcaacaaccaagaatgccatatcataagttatgcgtgttacctaggtagtacaattatctttgcagactatggggtattggaatggttgc |
100 |
Q |
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| T |
3652795 |
tggactgactgcaacaaccaagaatgccatatcataagttatgcgtgttacctaggtagtacaattatctgtgcagactatggggtattggaatggttgc |
3652894 |
T |
|
| Q |
101 |
aatttagctaattagtatcaaatcaaaatttatatggttctataactccaaaattagtaataatacaaagagtgggaaataatgaacctgattttaattt |
200 |
Q |
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| T |
3652895 |
aatttagctaattagtatcaaatcaaaatttatatggttctataactccaaaattagtaataatacaaagagtgggaaataatgaacctgattttaattt |
3652994 |
T |
|
| Q |
201 |
ggaattagtaaccctcaataagagttttagagaaaatgaagactcttatttataatgaacaagaacatgtttttgtgaacatgtttttgtaaacattgta |
300 |
Q |
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| T |
3652995 |
ggaatcagtaaccctcaataagagttttagagaaaatgaagactcttatttataatgaacaagaacatgtttttgtgaacatgtttttgtaaacattgta |
3653094 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
3653095 |
t |
3653095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 33052271 - 33052145
Alignment:
| Q |
155 |
tagtaataatacaaagagtgggaaataatgaacctgattttaatttggaattagtaaccctcaataagagttttagagaaaatgaagactcttatttata |
254 |
Q |
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| T |
33052271 |
tagtaataatacaaagattgggaaataatgaacctgattttaatttggaattagtaaccctcaataagagttttagagaaaatgaagactcttatttata |
33052172 |
T |
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| Q |
255 |
atgaacaagaacatgtttttgtgaaca |
281 |
Q |
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| T |
33052171 |
atgaacaagaacatgtttttgtaaaca |
33052145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 33052445 - 33052332
Alignment:
| Q |
33 |
cataagttatgcgtgttacctaggtagtacaattatctttgcagactatggggtattggaatggttgcaatttagctaattagtatcaaatcaaaattta |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33052445 |
cataagttatgcgtgttacctaggtagtacaattatctgcgtatactatggagtattggaatggttgcaat--------ttagtatcaaatcaaaattta |
33052354 |
T |
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| Q |
133 |
tatggttctataactccaaaatta |
156 |
Q |
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|||||| | |||||||||||||| |
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| T |
33052353 |
tatggt--tttaactccaaaatta |
33052332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 9045990 - 9046030
Alignment:
| Q |
159 |
aataatacaaagagtgggaaataatgaacctgattttaatt |
199 |
Q |
| |
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| T |
9045990 |
aataatacaaagactggaaaatattgaacctgattttaatt |
9046030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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