View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10741_low_17 (Length: 309)
Name: NF10741_low_17
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 33795071 - 33794777
Alignment:
| Q |
11 |
cagagaaagttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcattttttggtttgtccaccagctcgaaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33795071 |
cagagaaagttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcattttttggtttgcccaccagctcgaaag |
33794972 |
T |
|
| Q |
111 |
aaagctagagtaacacgaatcaacaagaattcagccccaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcacaagc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33794971 |
aaagctagagtaacacgaatcaacaagaattcagccccaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcgcaagc |
33794872 |
T |
|
| Q |
211 |
caaacattgcaagaagatcataaatatatagatcttagccagttgggcaatttaattccaattcttgagatagaaaagaagaaataaggaagaag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33794871 |
caaacattgcaagaagatcataaatatatagatcttagctagctgggcaatttaattccaattcttgagatagaaaggaagaaataaggaagaag |
33794777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 16780426 - 16780692
Alignment:
| Q |
14 |
agaaagttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcat---tttttggtttgtccaccagctcgaaag |
110 |
Q |
| |
|
|||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||| |||| |
|
|
| T |
16780426 |
agaaggttctaagagagaatgaacaagagtgtcacacaccaacttcatcacgaggtcaaa--gtagccataattttttagtttgtccaccagctccaaag |
16780523 |
T |
|
| Q |
111 |
aaagctagagtaacacgaatcaacaagaattcagccccaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcacaagc |
210 |
Q |
| |
|
||| | |||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
16780524 |
aaatcaagagtaacacaacgcaacaagaattcagctctaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcgcaaac |
16780623 |
T |
|
| Q |
211 |
caaacattgcaagaagatcataaatatatagatcttagccagttgggcaatttaattccaattcttgag |
279 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| || | ||||||||| ||| | |||||||| |
|
|
| T |
16780624 |
caaacattgcaagaagatcagaaatatatagttcttagctagctaggcaatttagttctatttcttgag |
16780692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University