View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_18 (Length: 306)
Name: NF10741_low_18
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 45259472 - 45259194
Alignment:
| Q |
17 |
attttaggatttaatttgataatttcgaatcggttattgccacttggtccctagatccacgtcatacttcattgtcaaccaaaacaattgtcatctcacc |
116 |
Q |
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| T |
45259472 |
attttaggatttaatttgataattttgaatcggttattgtcacttggtccctagatccacgtcatacttcattgtcaaccaaaacaattgtcatctcacc |
45259373 |
T |
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| Q |
117 |
ttttaacgaccaattttaacattaaggactataatggctattggaggtacacatccaatgagtattttgtattttatctcgagtcaacgaccattgtgat |
216 |
Q |
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| T |
45259372 |
ttttaacgaccaattttaacgttaaggactataatggctattggaggtacacatccaatgagtattttgtattttatctcgagtcaacgaccattgtgac |
45259273 |
T |
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| Q |
217 |
agcgaggtgtaaagtcagggaccaaaatttcgaactggtgactgtcactttggaccctagatccacgtcatacattctt |
295 |
Q |
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| T |
45259272 |
agcgaggagtaaagtcagggaccaaaatttcgaactggtgactgtcactttggaccctagatccacgtcatacattctt |
45259194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 33775546 - 33775607
Alignment:
| Q |
69 |
agatccacgtcatacttcattgtcaaccaaaacaattgtcatctcaccttttaacgaccaat |
130 |
Q |
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| T |
33775546 |
agatccacgtcatacatctttgttagacaaaacaattggcaactcatcttttaacgaccaat |
33775607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 45260188 - 45260252
Alignment:
| Q |
60 |
ttggtccctagatccacgtcatacttcattgtcaaccaaaacaattgtcatctcaccttttaacg |
124 |
Q |
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| T |
45260188 |
ttggtccgtaaatccacgtcatacatccttgttagccaaaacaattgtcggctcagcttttaacg |
45260252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 242
Target Start/End: Original strand, 17589597 - 17589751
Alignment:
| Q |
88 |
ttgtcaacc-aaaacaattgtcatctcaccttttaacgaccaattttaacattaaggactataatggctattggaggtacacatccaatgagtattttgt |
186 |
Q |
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| T |
17589597 |
ttgtcaacctaaaacaattgccatctcagctgttaacgaccatttctaacgtaaaggactaaactgtcaac-gaaggcacacatccagggactattttgt |
17589695 |
T |
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| Q |
187 |
attttatctcgagtcaacgaccattgtgatagcgaggtgtaaagtcagggaccaaa |
242 |
Q |
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| T |
17589696 |
attttatccggagttagagaccattgtgtcagcgaggtgcaaagtcagggaccaaa |
17589751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 52968616 - 52968533
Alignment:
| Q |
159 |
ggaggtacacatccaatgagtattttgtattttatctcgagtcaacgaccattgtgatagcgaggtgtaaagtcagggaccaaa |
242 |
Q |
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| T |
52968616 |
ggaggtacacatccagtgatcattttgtattttatcttgagtcatgtaccattgtgacaacgaggtgcaaagtgaaggaccaaa |
52968533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 17200704 - 17200786
Alignment:
| Q |
160 |
gaggtacacatccaatgagtattttgtattttatctcgagtcaacgaccattgtgatagcgaggtgtaaagtcagggaccaaa |
242 |
Q |
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| T |
17200704 |
gaggtacacatccagagactattttgtattttatcttgagtaaagaaccattgtgacagcgagatgtaaggtcagagaccaaa |
17200786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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