View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10741_low_19 (Length: 299)

Name: NF10741_low_19
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10741_low_19
NF10741_low_19
[»] chr1 (3 HSPs)
chr1 (9-299)||(38813944-38814234)
chr1 (19-137)||(38818506-38818624)
chr1 (13-138)||(38820731-38820856)
[»] chr3 (1 HSPs)
chr3 (13-65)||(11386781-11386833)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 38814234 - 38813944
Alignment:
Q  9 agcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaaca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38814234 agcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaaca 38814135  T
Q  109 tttgggagacgaagaaaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaattgaaaccatttaggtgaatgataagacacgagt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38814134 tttgggagacgaagaaaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaattgaaaccatttaggtgaatgataagacacgagt 38814035  T
Q  209 gtccatcacagagctgcagggttgcacatttggatttggtaactgttcctggctccgtgccatgtaacagaagccattcagcatcaagccc 299  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38814034 gtccatcacagaactgcagtgttgcacatttggatttggtaactgttcctggctccgtgccatgtaacagaagccattcagcatcaagccc 38813944  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 38818624 - 38818506
Alignment:
Q  19 ccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaacatttgggagac 118  Q
    |||||||| |||||||||||||||||||  ||||| |   | |||||||| |||| ||| ||||||||||||||||||||||| ||||||||||| | ||    
T  38818624 ccaagttccacagcatttctacatccaatcccatagtatgtttccaacttggccacattgtctttgattccaactccaacaaaggtaacatttggcatac 38818525  T
Q  119 gaagaaaattaagcagtga 137  Q
    ||||||| ||||| |||||    
T  38818524 gaagaaagttaagtagtga 38818506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 38820856 - 38820731
Alignment:
Q  13 aagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaacatttg 112  Q
    |||||||||||||| ||||||||||| |||| ||  ||||| | |||||| |  ||||||||||| |  ||||| ||||| |||||||| |||  || ||    
T  38820856 aagggtccaagttccacagcatttctgcatctaaccccatattccttctcaagtttagccaaattatgattgataccaacaccaacaaaggtataatctg 38820757  T
Q  113 ggagacgaagaaaattaagcagtgat 138  Q
    | ||||||||||||||||||| ||||    
T  38820756 gaagacgaagaaaattaagcaatgat 38820731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 11386781 - 11386833
Alignment:
Q  13 aagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaa 65  Q
    ||||||||||||||||| |||||||| |||||||  ||||  |||||||||||    
T  11386781 aagggtccaagttcaactgcatttctgcatccaatcccatgatgcttctccaa 11386833  T

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