View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_20 (Length: 296)
Name: NF10741_low_20
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 21706478 - 21706206
Alignment:
| Q |
9 |
atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagac |
108 |
Q |
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| T |
21706478 |
atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacgtaaaacttgtaaatgcttgagacattggagac |
21706379 |
T |
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| Q |
109 |
tctgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataaatccaagtacagttttaggggcaagttctgaaa |
208 |
Q |
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| T |
21706378 |
tctgagtctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaa |
21706279 |
T |
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| Q |
209 |
atgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacat |
281 |
Q |
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| T |
21706278 |
atgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacat |
21706206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 21712986 - 21713191
Alignment:
| Q |
9 |
atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagac |
108 |
Q |
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| T |
21712986 |
atggacatcaactctggtagacttctagattccttcatggagaacaaagatttcaaattttcacaatcacctacttttaaatactggagacattggagac |
21713085 |
T |
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| Q |
109 |
tctgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataaatccaagtacagttttaggggcaagttctgaaa |
208 |
Q |
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| T |
21713086 |
tccatatctgtcttggagctgtaggatcctgccatgatatggatttcaactgaggcaaaacatgtaaatacaactccagttttaagggcaagttctgaac |
21713185 |
T |
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| Q |
209 |
atgaaa |
214 |
Q |
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| T |
21713186 |
atgaaa |
21713191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 21709388 - 21709236
Alignment:
| Q |
11 |
ggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagactc |
110 |
Q |
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||||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||||| ||| ||| || ||| |||||||||||||||| |
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| T |
21709388 |
ggacatcaactttagtagacttctagattccttcacggagaatagagatttcagattttcacaatcaccaacatttcaacgctggagacattggagactc |
21709289 |
T |
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| Q |
111 |
tgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgagg |
163 |
Q |
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| T |
21709288 |
cgaatttgtcttggagttataagacccaaccatgatatggcgttcaattgagg |
21709236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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