View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_21 (Length: 282)
Name: NF10741_low_21
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 17734662 - 17734406
Alignment:
| Q |
10 |
agcagagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
109 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17734662 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
17734563 |
T |
|
| Q |
110 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
209 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
17734562 |
cggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgtt |
17734463 |
T |
|
| Q |
210 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgctctgatgt |
266 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17734462 |
cagagaaacgttggtgaggtttgtcagtgattttccgatgagattctgctctgatgt |
17734406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 17743902 - 17743656
Alignment:
| Q |
10 |
agcagagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
109 |
Q |
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|||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17743902 |
agcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
17743803 |
T |
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| Q |
110 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
209 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
17743802 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgtt |
17743703 |
T |
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| Q |
210 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattct |
256 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
17743702 |
cagagaaacgttggtgaatttggtgagtgattttccgatgagattct |
17743656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 16720678 - 16720430
Alignment:
| Q |
10 |
agcagagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||||||||||||| |
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| T |
16720678 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagc |
16720579 |
T |
|
| Q |
110 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
209 |
Q |
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|||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||| |
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| T |
16720578 |
cggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgtt |
16720479 |
T |
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| Q |
210 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
258 |
Q |
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|| |||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
16720478 |
catggaaatgttggttaggtttgtaaatgattttccgatgagattctgc |
16720430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 17697692 - 17697444
Alignment:
| Q |
10 |
agcagagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
109 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||||||||||||| |
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| T |
17697692 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagc |
17697593 |
T |
|
| Q |
110 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
209 |
Q |
| |
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|||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||| |
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| T |
17697592 |
cggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgtt |
17697493 |
T |
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| Q |
210 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
258 |
Q |
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|| |||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
17697492 |
catggaaatgttggttaggtttgtaaatgattttccgatgagattctgc |
17697444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 17716611 - 17716363
Alignment:
| Q |
10 |
agcagagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
109 |
Q |
| |
|
|||| ||||||||| ||| ||||| ||||||||||||||| |||| |||||| |||||||||||| |||||||||| ||||| | |||||||||||||| |
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| T |
17716611 |
agcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggagc |
17716512 |
T |
|
| Q |
110 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
209 |
Q |
| |
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|||||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||| |
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| T |
17716511 |
cggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgtt |
17716412 |
T |
|
| Q |
210 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
258 |
Q |
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|| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
17716411 |
catggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
17716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 16729551 - 16729303
Alignment:
| Q |
10 |
agcagagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
109 |
Q |
| |
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|||| ||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||||| ||||| |
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| T |
16729551 |
agcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagc |
16729452 |
T |
|
| Q |
110 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
209 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||| |
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| T |
16729451 |
tggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgtt |
16729352 |
T |
|
| Q |
210 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
258 |
Q |
| |
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|| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
16729351 |
catggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
16729303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 17706623 - 17706375
Alignment:
| Q |
10 |
agcagagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagc |
109 |
Q |
| |
|
|||| ||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||||| ||||| |
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| T |
17706623 |
agcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagc |
17706524 |
T |
|
| Q |
110 |
cggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgtt |
209 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||| |
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| T |
17706523 |
tggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgtt |
17706424 |
T |
|
| Q |
210 |
cagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
258 |
Q |
| |
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|| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
17706423 |
catggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
17706375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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