View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_26 (Length: 269)
Name: NF10741_low_26
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13911664 - 13911552
Alignment:
| Q |
1 |
tacatcttacaccaacacatgtaattacatttgatcacatttattttcttaaactattaccaatgtcatttttggtgacagagtttttgccagtgcttcc |
100 |
Q |
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| T |
13911664 |
tacatcttacaccaacacatgtaattacatttgatcacatttattttcttaaactattaccaatgtcatttttggtgatcgagtttttgccagtgcttcc |
13911565 |
T |
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| Q |
101 |
tacggggtgacag |
113 |
Q |
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| T |
13911564 |
tacggggtgacag |
13911552 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 33331945 - 33331995
Alignment:
| Q |
9 |
acaccaacacatgtaattacatttgatcacatttattttcttaaactatta |
59 |
Q |
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| T |
33331945 |
acaccgacacatgtaattacatttaatcacttttattttctcaaattatta |
33331995 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 21606597 - 21606645
Alignment:
| Q |
11 |
accaacacatgtaattacatttgatcacatttattttcttaaactatta |
59 |
Q |
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| T |
21606597 |
accaacacatgtagttacacttaatcacttttattttcttaaattatta |
21606645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 32199574 - 32199522
Alignment:
| Q |
9 |
acaccaacacatgtaattacatttgatcacatttattttcttaaactattacc |
61 |
Q |
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||||||||||| || |||||||| || ||| |||||||||||||| ||||||| |
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| T |
32199574 |
acaccaacacaagtgattacattcgaccacttttattttcttaaattattacc |
32199522 |
T |
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