View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10741_low_28 (Length: 259)

Name: NF10741_low_28
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10741_low_28
NF10741_low_28
[»] chr4 (7 HSPs)
chr4 (1-241)||(45318551-45318791)
chr4 (19-241)||(45318455-45318695)
chr4 (13-159)||(45318659-45318805)
chr4 (79-210)||(45318422-45318550)
chr4 (83-241)||(45318327-45318485)
chr4 (155-241)||(45318303-45318386)
chr4 (167-226)||(45318783-45318839)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45318551 - 45318791
Alignment:
Q  1 gatgacgacgacgatggtaagaaagcaaatcctactgttaacctggtggagtctgagaaaattactggtaaccagatagagcctgagaaaattgaggccg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45318551 gatgacgacgacgatggtaagaaagcaaatcctacagttaacctggtggagtctgaaaaaattactggtaaccagatagagcctgagaaaattgaggccg 45318650  T
Q  101 aagaagatgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagactgagaaaattgaggctgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45318651 aagaagatgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagactgagaaaattgaggctgaaga 45318750  T
Q  201 tgatgatgataagaaaacaaatcctactgataaccaggtgg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45318751 tgatgatgataagaaaacaaatcctactgataaccaggtgg 45318791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 45318455 - 45318695
Alignment:
Q  19 aagaaagcaaatcctactgttaacctggtggagtctgagaaaattactggtaaccagatagagcctgagaaaattgaggccgaagaagatgatga----- 113  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||||||         
T  45318455 aagaaagcaaatcctacagttaaccaggtggagtcggagaaaattactgttaaccaggtagagcctgagaaaattgaggctgaagatgatgatgatgatg 45318554  T
Q  114 -------------taagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagactgagaaaattgaggctgaaga 200  Q
                 |||||||||||  |||||  |||||| |||||||||||| ||||||| || | ||||| ||||| |||||||||||||||| |||||    
T  45318555 acgacgacgatggtaagaaagcaaatcctacagttaacctggtggagtctgaaaaaattactggtaaccagatagagcctgagaaaattgaggccgaaga 45318654  T
Q  201 tgatgatgataagaaaacaaatcctactgataaccaggtgg 241  Q
     ||||||||||||||| |||  ||||||  |||||||||||    
T  45318655 agatgatgataagaaagcaacgcctactcttaaccaggtgg 45318695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 45318659 - 45318805
Alignment:
Q  13 gatggtaagaaagcaaatcctactgttaacctggtggagtctgagaaaattactggtaaccagatagagcctgagaaaattgaggccgaagaagatgatg 112  Q
    |||| |||||||||||  |||||| |||||| |||||||||||||||||||| || | ||||| ||||| |||||||||||||||| ||||| |||||||    
T  45318659 gatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagactgagaaaattgaggctgaagatgatgatg 45318758  T
Q  113 ataagaaagcaacgcctactcttaaccaggtggagtctgagaaaatt 159  Q
    |||||||| |||  ||||||  ||||||||||||| |||||||||||    
T  45318759 ataagaaaacaaatcctactgataaccaggtggagcctgagaaaatt 45318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 79 - 210
Target Start/End: Original strand, 45318422 - 45318550
Alignment:
Q  79 gagcctgagaaaattgaggccgaagaagatgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagaga 178  Q
    |||||||||||||||||||| ||| |   |||||| ||||||||||  |||||  |||||||||||||||| |||||||||| |||| |||||||||||     
T  45318422 gagcctgagaaaattgaggctgaaaa---tgatgagaagaaagcaaatcctacagttaaccaggtggagtcggagaaaattactgttaaccaggtagagc 45318518  T
Q  179 ctgagaaaattgaggctgaagatgatgatgat 210  Q
    ||||||||||||||||||||||||||||||||    
T  45318519 ctgagaaaattgaggctgaagatgatgatgat 45318550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 45318327 - 45318485
Alignment:
Q  83 ctgagaaaattgaggccgaagaagatgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagaga---- 178  Q
    |||||||||||||||| ||||   ||||||||||||||  ||  |||||| | ||||||||||||| ||| |||||||| ||| |||||| |||||        
T  45318327 ctgagaaaattgaggctgaag---atgatgataagaaaaaaaatcctactataaaccaggtggagtatgaaaaaattatcgttaaccaggcagagacgga 45318423  T
Q  179 --ctgagaaaattgaggctgaagatgatgatgataagaaaacaaatcctactgataaccaggtgg 241  Q
      ||||||||||||||||||||    ||||||| |||||| |||||||||| | |||||||||||    
T  45318424 gcctgagaaaattgaggctgaa---aatgatgagaagaaagcaaatcctacagttaaccaggtgg 45318485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 45318303 - 45318386
Alignment:
Q  155 aaattattgttcaccaggtagagactgagaaaattgaggctgaagatgatgatgataagaaaacaaatcctactgataaccaggtgg 241  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||   |||||||||||||||| ||||||||||   ||||||||||    
T  45318303 aaattattgtttaccaggtggagtctgagaaaattgaggctgaa---gatgatgataagaaaaaaaatcctactataaaccaggtgg 45318386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 45318783 - 45318839
Alignment:
Q  167 accaggtagagactgagaaaattgaggctgaagatgatgatgataagaaaacaaatccta 226  Q
    ||||||| ||| ||||||||||||||||||||    |||||||||||||| |||||||||    
T  45318783 accaggtggagcctgagaaaattgaggctgaa---tatgatgataagaaagcaaatccta 45318839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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