View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_3 (Length: 418)
Name: NF10741_low_3
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 10495226 - 10495100
Alignment:
| Q |
103 |
aaataagagatattggtgaatcttacttta-ccgaacccgagccttgagtaggaattaggagtaataggaattggaaactgagttagtaaatacttaccg |
201 |
Q |
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| T |
10495226 |
aaataagagatattggtgaatcttactttaaccgaacccgagccttgagtaggaattaggagtaataggaattggaaattgagttagtaaatacttaccg |
10495127 |
T |
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| Q |
202 |
attctcaatgtaagattctatgaaggg |
228 |
Q |
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| T |
10495126 |
attctcaatgtaaaattctatgaaggg |
10495100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10495416 - 10495313
Alignment:
| Q |
1 |
taagtttaaccataaggaattgaatttaaagtgttaggagtactctaattcaaattactttataaattgcattggttattgattataaaattgtatttcc |
100 |
Q |
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| T |
10495416 |
taagtttgaccataaggaattgaatttaaagtgttaggagtactctaattcaaattactttataaattgcattggttattgattataaaattgtatttct |
10495317 |
T |
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| Q |
101 |
acaa |
104 |
Q |
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| T |
10495316 |
acaa |
10495313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 10494955 - 10494898
Alignment:
| Q |
351 |
ttggtttgcggtgctttgtgatggtttccatggtgatgttgataccgggtcttctgtg |
408 |
Q |
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| T |
10494955 |
ttggtttgcggtgctttgtgatggttttcatggtggtgttgatattgggtcttttgtg |
10494898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 29822531 - 29822616
Alignment:
| Q |
113 |
tattggtgaatcttacttta-ccgaacccgagccttgagtaggaattaggagtaataggaattggaaactgagttagtaaatactt |
197 |
Q |
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| T |
29822531 |
tattggtgaatcttactttaaccaaacccgagtcttgagtaggatttaggattaataggaattcaaaactgagttagtaaatactt |
29822616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 29822366 - 29822430
Alignment:
| Q |
39 |
agtactctaattcaaattactttataaattgcattggttattgattataaaattgtatttccacaa |
104 |
Q |
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| T |
29822366 |
agtactctaattcaaattacttc-taaattgcattggtgattgattataaaattgaatttctacaa |
29822430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 35966589 - 35966638
Alignment:
| Q |
145 |
cttgagtaggaattaggagtaataggaattggaaactgagttagtaaata |
194 |
Q |
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| T |
35966589 |
cttgagtaggaattagaagttagaggaattggaaagtaagttagtaaata |
35966638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 14950328 - 14950384
Alignment:
| Q |
339 |
atttttcgttgt-ttggtttgcggtgctttgtgatggtttccatggtgatgttgata |
394 |
Q |
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| T |
14950328 |
attttttgttgtgttggtttgtggtggttcgtggtggtttccatggtgatgttgata |
14950384 |
T |
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